Query= MSMg01no488_o06.b1 MSMg01no488_o06.b1 CHROMAT_FILE:
MSMg01no488_o06.b1 PHD_FILE: MSMg01no488_o06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:56 2005
(582 letters)
>mm_chr3_119824220_119825201
Length = 982
Score = 953 bits (493), Expect = 0.0
Identities = 564/601 (93%), Gaps = 29/601 (4%)
Strand = Plus / Minus
Query: 1 tataaaggttcaataggtgaggaatcattggaatagtctctctacagtgaaatacatgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 tataaaggttcaataggtgaggaatcattggaatagtctctctacagtgaaatacatgtt 807
Query: 61 gagagagagagagagagagagagagagagagagagagagagagagagagagagagag-ga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 806 gagagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 747
Query: 120 gagagattgtctgctactatgcacacagaagagattcaggacttgttgagtttctttgat 179
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gagaga--gtctgctattatgcacacagaagagattcaggacttgttgagtttctttga- 690
Query: 180 ttttttgagaaacaacattaaggatatttggaatcttatgaggcatcccagttacttcag 239
|||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 689 -tttttgagcaacaccattaaggatatttggaaacttatgaggcatcccagttacttcag 631
Query: 240 tg------ttttttcat-ttttttgattggtggtaccctactgcattctaagggtattag 292
|| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tgcacaaa------catcctttttgattggtggtaccctactgcattctaagggtattag 577
Query: 293 cagtacccattgaagacagagatgttatatggagtcttagacaacactaaagttaaccat 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cagtacccattgaagacagagatgttatatggagtcttagacaacactaaagttaaccat 517
Query: 353 agcaaaattttggagaaagttatgccttgatacatccttgagtatttagcatctgaaa-- 410
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 516 agcaaaagtttggagaaagttatgccttgatacatccttgagtatttagcgtctgaaact 457
Query: 411 -a-----tg---agcttttgcaccctgatgtttcctaaatctttgactataagaccgcta 461
| || ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 456 gagctcttggctagcttttgcaccctggtgtttcctaaatctttgactataagaccgcta 397
Query: 462 gtgttatgtagtctagagatatttagtgtctgattcatcaaattttccacttgttactac 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gtgttatgtagtctagagatatttagtgtctgattcatcaaattttccacttgttactac 337
Query: 522 tgagctgcctggagtcctttttctctaatgattaaaatcatgagtaagcaaagagaagct 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgagctgcctggagtcctttttctctaatgattaaaatcatgagtaagcaaagagaagct 277
Query: 582 c 582
|
Sbjct: 276 c 276
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 99
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_o06.g1 MSMg01no488_o06.g1 CHROMAT_FILE:
MSMg01no488_o06.g1 PHD_FILE: MSMg01no488_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:56 2005
(659 letters)
>mm_chr3_119723945_119725003
Length = 1059
Score = 1251 bits (647), Expect = 0.0
Identities = 656/659 (99%)
Strand = Plus / Plus
Query: 1 ctaaagtcccctcttatgctttcaaatcaagttgctccaaaagggaccttaataatgatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaagtcccctcttatgctttcaaatcaagttgctccaaaagggaccttaataatgatc 260
Query: 61 tgggcccattgccagcttacctagtgccttcatgaagcttagtgaaggtgtctttgtaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggcccattgccagcttacctagtgccttcatgaagcttagtgaaggtgtctttgtaga 320
Query: 121 cgagcagagcaaccctttccagaaaggcatggcagtaggtgtgtacctgtgctgcttctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgagcagagcaaccctttccagaaaggcatggcagtaggtgtgtacctgtgctgcttctt 380
Query: 181 gtccattcagggctctgttggtctataattccaatgacactgagtctttctgtttgagga 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtccattcaggactctgttggtctataattccaatgacactgagtctttctgtttgagga 440
Query: 241 ttttctttgaatagggaagttttttcctcctctaccttgaagttccttgttataaactga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttctttgaatagggaagttttttcctcctctaccttgaagttccttgttataaactga 500
Query: 301 ccatggacagactcacaggagaagaaggtatgctaacttaagtgtcaagagcacggcagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccatggacagactcacaggagaagaaggtatgctaacttaagtgtcaagagcacggcagg 560
Query: 361 aaaatgagtaatctgatgtagaaaagatgtcccttcttataaggaagggagagattaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaatgagtaatctgatgtagaaaagatgtcccttcttataaggaagggagagattaagg 620
Query: 421 aatatagccagcttctgaagtgcaaaggaaagtgacttttagcagacacgaatgattcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatatagccagcttctgaagtgcaaaggaaagtgacttttagcagacacgaatgattcca 680
Query: 481 aaggagccaggcaatagtttgggaaaaagttctttttagctcttgaggatattgagatac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaggagccaggcaatagtttgggaaaaagttctttttagctcttgaggatattgagatac 740
Query: 541 attatggggtggttggggataaaatttccctgacaaaaattggtattagattacacagac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attatggggtggttggggataaaatttccctgacaaaaattggtattagattacacagac 800
Query: 601 aaaatctcctagatagactcccacaatagatgagacatctatttgtgtaagttgatagc 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaaatctcctagatagactcccacaatagatgagacatctatttgtgtaagttgatagc 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
