BAC Information

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BAC

Clone NameMSMg01-488O09
Chromosome3 (Build37)
Map Location 124,903,508 - 124,904,175
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817, LOC668820
Downstream geneNdst4, Ugt8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488O09.T7 (MSMg01no488_o09.b1)MSMg01-488O09.TJ (MSMg01no488_o09.g1)
ACCAG567512AG567513
length744744
length of high quality
(start - end)
669 (76 - 744)663 (72 - 734)
definitionCHROMAT_FILE: MSMg01no488_o09.b1 PHD_FILE: MSMg01no488_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:56 2005CHROMAT_FILE: MSMg01no488_o09.g1 PHD_FILE: MSMg01no488_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGC
GGAATTCCTTCTCCCTCTGCTAAGTAAAAAACAAAATACTTTTTTAAACA
TAAACTACCCCAAATATATAAAACAAATATTTTTCACAGCCTAAGTTTTA
AGGCTACAACTGTTAATGACTACAAATGATTTCTTCCTAGGAATATAGTT
TTTGTAGAAGACCTCAGAGTCTCTCCCTTGTGTGAAGTGGGGATTCCAGA
GACATGATGGGAAACACAAACTTGAGGTGACATTTTCTGATCTTTGCATG
GTCTTTTCTATCTTGAATTTCCCTTTTCATTGCTCAAATTCCTATAACAA
GCTGTTTGGTTTTTATTCAAATGAAGAATACCAAGAAGATGTGTAGAATG
GTAGAGGAGGATGGAGACTTTATACAGAAGTTCACCTCTCACTTTTTTTT
CTCATAGATTTTGTACAGACTTATTTCTGAATTGTATTTTTACAATGACA
CTTCCTGCTAATAGTTTTATCCCTAAGAAGGTGATCTCAAAAACATATTT
TCCATCTATTTAAAGACATTTTCATTGCTGATTTTCCATCTAAGTCAGCA
TACACCATTTATTCATAGCATTAGTCCTTGGGAATGAGCCTAAAACCCAC
TCTGCTAACCTCATGTTGGTGTGCTTTCATTCCACATTAACCACCATGTC
TACTTATTGCACAAAGGCATGATCTGCCATTGTTGTTGCTTTTN
CAATGCAGTGGGAGGCCTGGNGGCCGCCTTTTCGAAAAGGGTAGGTGACC
TATAGATTGCCACAAGGAGATCTCACCTGAGGAATACCGCATGGCAGAGA
AGCAGCTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAACCAACACTGAGATTCCACTTCACTCCAGTCAGAAAGGCTAAGATCA
AAAACTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGGGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAACTTGTACAACCACTCTGGAAATC
AGTCTGGTGGTTCCTCTTAAAATTGGACATAGTGCTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACAGGTAAGAAG
AACACATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATTTACACAATGGAATACTACTCAGCTATTAAAAAAATGAATTTA
TGAAATTCCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAG
GTAACCCAATCACAATGGAACTCGCACAATATGTACTCACTGATAAGTGG
ATATTAGCCCAGAAACTTAGGATGCCCAAGATATAAGATACAACTTGCCA
AACGCATGAAATTCAAGAAGAACAAAGACCAAAGTGTGGACACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_o09.b1 MSMg01no488_o09.b1 CHROMAT_FILE:
MSMg01no488_o09.b1 PHD_FILE: MSMg01no488_o09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:56 2005
         (669 letters)



>mm_chr3_124903308_124904376
          Length = 1069

 Score = 1276 bits (660), Expect = 0.0
 Identities = 666/668 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaaacaaaatacttttttaaacataaactaccccaaatatataaaacaaatatttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaaacaaaatacttttttaaacataaactaccccaaatatataaaacaaatatttttc 260

                                                                       
Query: 61  acagcctaagttttaaggctacaactgttaatgactacaaatgatttcttcctaggaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagcctaagttttaaggctacaactgttaatgactacaaatgatttcttcctaggaata 320

                                                                       
Query: 121 tagtttttgtagaagacctcagagtctctcccttgtgtgaagtggggattccagagacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtttttgtagaagacctcagagtctctcccttgtgtgaagtggggattccagagacat 380

                                                                       
Query: 181 gatgggaaacacaaacttgaggtgacattttctgatctttgcatggtcttttctatcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgggaaacacaaacttgaggtgacattttctgatctttgcatggtcttttctatcttg 440

                                                                       
Query: 241 aatttcccttttcattgctcaaattcctataacaagctgtttggtttttattcaaatgaa 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 aatttcccttttcattgctcaaattcctataacaagctgtttagtttttattcaaatgaa 500

                                                                       
Query: 301 gaataccaagaagatgtgtagaatggtagaggaggatggagactttatacagaagttcac 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 gaataccaagaagatgtgtagaatggtagaggaggctggagactttatacagaagttcac 560

                                                                       
Query: 361 ctctcacttttttttctcatagattttgtacagacttatttctgaattgtatttttacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctcacttttttttctcatagattttgtacagacttatttctgaattgtatttttacaa 620

                                                                       
Query: 421 tgacacttcctgctaatagttttatccctaagaaggtgatctcaaaaacatattttccat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgacacttcctgctaatagttttatccctaagaaggtgatctcaaaaacatattttccat 680

                                                                       
Query: 481 ctatttaaagacattttcattgctgattttccatctaagtcagcatacaccatttattca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctatttaaagacattttcattgctgattttccatctaagtcagcatacaccatttattca 740

                                                                       
Query: 541 tagcattagtccttgggaatgagcctaaaacccactctgctaacctcatgttggtgtgct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagcattagtccttgggaatgagcctaaaacccactctgctaacctcatgttggtgtgct 800

                                                                       
Query: 601 ttcattccacattaaccaccatgtctacttattgcacaaaggcatgatctgccattgttg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttcattccacattaaccaccatgtctacttattgcacaaaggcatgatctgccattgttg 860

                   
Query: 661 ttgctttt 668
           ||||||||
Sbjct: 861 ttgctttt 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)