Query= MSMg01no489_c19.b1 MSMg01no489_c19.b1 CHROMAT_FILE:
MSMg01no489_c19.b1 PHD_FILE: MSMg01no489_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:18 2005
(597 letters)
>mm_chr3_102109128_102110124
Length = 997
Score = 934 bits (483), Expect = 0.0
Identities = 550/589 (93%), Gaps = 27/589 (4%)
Strand = Plus / Minus
Query: 5 gaattcaagagattccagttctatctgcagtgcttcgtattgatacacttgtatgcacgg 64
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 652 gaattcaagagaacccagttctatctgcagtgctttgtattgatacacttgtatgcacgg 593
Query: 65 agctgagtgtgggaagggattgctctcttttttgcttcctgacagatgagagcatcaacc 124
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 592 agctgagtgtgggaagggattgctctctcttttgcttcctgacagatgagagcatcaacc 533
Query: 125 tgacatactcagctctgtgatgcttttaaagtccaagcccagaggaagttacctagtgag 184
||||||||||||||||||||||||||||||||||| ||
Sbjct: 532 tgacatactcagctctgtgatgcttttaaagtcca-----------------------ag 496
Query: 185 ctacactgtcttctactctcctcacttctctctggtctcattcagtgtaatcaacctctc 244
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 495 ctacactgtcttctactctcctcacttctctctgatctcattcagtgtaatcaacctctc 436
Query: 245 agcataggggtcagaaaacacatcagctgctagaccaacggcactctgtctgtcacacac 304
|||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||
Sbjct: 435 agcataggggtcagaaaacacatcagctgcaagaccaatggcactctgtctgt----cac 380
Query: 305 acacacacacacacacacacacacacacacacacacacacacacacacagtgttggtaac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acacacacacacacacacacacacacacacacacacacacacacacacagtgttggtaac 320
Query: 365 tgtcatagtctgcttctctgttgctgtggtaaaacaccatgaccaaaagtagattgtgga 424
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 319 tgtcatagtctgcttctctgttgctgtggtaaaacaccattaccaaaagtagcttgtgga 260
Query: 425 ggaaagggtccatttcacctcaatggttacagtctatcagtatggtaagtcaggacagga 484
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 259 ggaaagggtccatttcacttcaatggttacaatctatcagtatggtaagtcaggacagga 200
Query: 485 actcaaggctggaacctggaggcaggaactgaggcagagaccatggaggactgctgtttg 544
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 199 actcaaggctggaacctggaggcaggaactgaggcagagaccatggaggagtgctgtttg 140
Query: 545 ctggctctctctctctctctctctctctctctctctctctctctctctc 593
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ctggctctctctctctctctctctctctctctctctctctctctctctc 91
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 105
Number of extensions: 47
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_c19.g1 MSMg01no489_c19.g1 CHROMAT_FILE:
MSMg01no489_c19.g1 PHD_FILE: MSMg01no489_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:18 2005
(499 letters)
>mm_chr3_101916680_101917577
Length = 898
Score = 920 bits (476), Expect = 0.0
Identities = 493/499 (98%), Gaps = 1/499 (0%)
Strand = Plus / Plus
Query: 1 aatgccagctctgacagactgacctgtctgtgtgagttctactgatcctggatcccaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgccagctctgacagactgacctgtctgtgtgagttctactgatcctggatcccaaag 260
Query: 61 ttaaggattttctgcacctgactcactttggcctatcgttcctttcaggattcagtgaag 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ttaaggattttctgcacctgactcactttggcctctcgttcctttcaggattcagtgaag 320
Query: 121 aaggaagcctgtatgttctgaagggtgaccgcacgattgagtttgatggggagttcgcag 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 aaggaagcctgtatgttctgaagggtgaccgcacgattgagtttgacggggagttcgcag 380
Query: 181 cagatgtcttagtggaatttctcttggatgtaagtatttagcaagtggctttgtgtgcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagatgtcttagtggaatttctcttggatgtaagtatttagcaagtggctttgtgtgcag 440
Query: 241 ctgtttcatataggagaggccacagctctgacgcaaaaagagaggagccagagagcctgg 300
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtcccatataggagaggccacagctctgacgcaaaaagagaggagccagagagcctgg 500
Query: 301 catggcctcaggcattgatcaggctgcccaaacaatgagcagatagaaacagtacttgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catggcctcaggcattgatcaggctgcccaaacaatgagcagatagaaacagtacttgtg 560
Query: 361 ttagagtagagtcttttctaaaaaacagacccttaagtcaccatagaaattgttataagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttagagtagagtcttttctaaaaaacagacccttaagtcaccatagaaattgttataagt 620
Query: 421 gacccaagggtagtgtgggtgtttatatggggtgttagaagttacatggnattctcttac 480
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 621 gacccaagggtagtgtgggtgtttatatggg-tgttagaagttacatggtattctcttac 679
Query: 481 cagttataccctgataccc 499
|||||||||||||||||||
Sbjct: 680 cagttataccctgataccc 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 898
Length adjustment: 10
Effective length of query: 489
Effective length of database: 888
Effective search space: 434232
Effective search space used: 434232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
