BAC Information

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BAC

Clone NameMSMg01-489K12
Chromosome3 (Build37)
Map Location 106,836,409 - 106,958,029
singlet/doubletdoublet
Overlap geneKcna3, AI504432, Kcna2
Upstream geneLOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266
Downstream geneKcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489K12.T7 (MSMg01no489_k12.b1)MSMg01-489K12.TJ (MSMg01no489_k12.g1)
ACCAG568087AG568088
length730723
length of high quality
(start - end)		625 (52 - 676)313 (332 - 644)
definitionCHROMAT_FILE: MSMg01no489_k12.b1 PHD_FILE: MSMg01no489_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:58 2005CHROMAT_FILE: MSMg01no489_k12.g1 PHD_FILE: MSMg01no489_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,957,409 - 106,958,029)(106,836,409 - 106,836,721)
sequence
NNNNNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGTCCATTTTCTAGTTCTCTTTGTAGAGTCCCTGATGCC
TCCAGACAGACCATCACGAGGGTGTGGCTAGGCGGGGCTTGCAGCTCCAT
TGCCACCCTATGATGGGTCAGGAGCTACCTTACCAGCCTCCCCATCTTGG
CTCTTTCCCTAGGCTCAGGACTGGGCTGTCAAGTATAGCTTGGGAAGCAG
GGAGGGAGGGTGAGTCTAGCACCACATGTCCTGGAAGGACAAATGTGAAA
ATATAAAAAGCTTCTGGTCTTGGGGCCGAGTCACATGACTGGGTGGCCTG
CCACCTTGGCTGTCGAATTGTCAGTTCCTGGGAGGGTTGATGCTCCAGCT
TCAGCTAGGGCGGGGGTGGGTGGGAAAAGCTGGGTTGTGAAGATAACAGG
TCTTGGTTGAGTCATGATTGAACTCTCCTGCAGATGTCTTCCAGCTTCAG
AGGAGGAAACTGAGGCCCAGGGCCGTGGCGGGCAAGGTGTACTCTAACTC
AGACTTGAGTCCTCTGATTCTTCACCTAGCCTTGCTTGTCTGTGGTGCAG
CCAATGCCTCTCTCCTCGGCAGAAGCTAGTGAAGCTAGCTGAAGAGGAGA
GAGCTCCCTAGGGTTTTTCCTGGAGGGTGGTGTGGAGGTTTTGGGGGAAN
TNNTTNNNTNTCTGGNNTCCTCTGCTTTTG

NNNNNAACGATGAAGTGGGTAGGTCTGGNGGNTGCCTGGATCGNTACCGG
GGGNGANACNANAGAAGTTTCAAACAGCGAGGCTGNGNAAGTTGAATTCT
TAATAAGGGACAGGTCTATATATTTAAAGCTAGGAAAGCACAATGCCTAG
TATGTGGGTAATTGTTCTTTCTCCATTCTTGTATCTATAAATGTGGGTTA
GGATAGTTCCTAATCCTTTCACATCCTCAGATACCCCAGAGCTATTCCCA
GATGTTTTTTCCCATCTGGTGAACAAATGCGAAGCTATTTCTATTCCTGC
TACGGTCAGTCAGAAGCCAAATTTNATCGTTGAGCAAATAGAAAGGCCAA
ATGCTAAGACTCACTTGTTGCTTGCAAACCTGATGGTTTTACTTCGACTT
GAATACTAGGGACTGAAATGCAAAGCAATCCTGCACAGGCTCTGAGAAGC
TGTTTGCTTTGCCACAGTTCTACACTTAAACATTATAATAATAATATTAT
TATTATCTCACAGGGGTGTCATGAGGATTAATGAGACATTATCAAATCAC
TTTGAGCTACTCCCCTGGGGGTACTAAATAAATGGTATGTGTCCCCCTGA
AGTGCCACTTTTGACATTGATTTGTCGCAACTGGTTCTGCTGTCCAATAT
GTCTGGAACGCTCCCACCAGCCCGTTTCCTATAGGCGAACAAGTAGCCAT
CAAAAGGCACTGGTTTTCAGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_k12.b1 MSMg01no489_k12.b1 CHROMAT_FILE:
MSMg01no489_k12.b1 PHD_FILE: MSMg01no489_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:58 2005
         (625 letters)



>mm_chr3_106957205_106958229
          Length = 1025

 Score = 1170 bits (605), Expect = 0.0
 Identities = 617/621 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtccattttctagttctctttgtagagtccctgatgcctccagacagaccatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 gaattctgtccattttctagttctctttgtagagtccctgatgcctccagacagaccatc 766

                                                                       
Query: 65  acgagggtgtggctaggcggggcttgcagctccattgccaccctatgatgggtcaggagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 acgagggtgtggctaggcggggcttgcagctccattgccaccctatgatgggtcaggagc 706

                                                                       
Query: 125 taccttaccagcctccccatcttggctctttccctaggctcaggactgggctgtcaagta 184
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 705 taccttaccagcctccccatcttggctctttccttaggctcaggactgggctgtcaagta 646

                                                                       
Query: 185 tagcttgggaagcagggagggagggtgagtctagcaccacatgtcctggaaggacaaatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tagcttgggaagcagggagggagggtgagtctagcaccacatgtcctggaaggacaaatg 586

                                                                       
Query: 245 tgaaaatataaaaagcttctggtcttggggccgagtcacatgactgggtggcctgccacc 304
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 585 tgaaaatataaaaagcttctggtcttggggccgagtcacacgactgggtggcctgccacc 526

                                                                       
Query: 305 ttggctgtcgaattgtcagttcctgggagggttgatgctccagcttcagctagggcgggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ttggctgtcgaattgtcagttcctgggagggttgatgctccagcttcagctagggcgggg 466

                                                                       
Query: 365 gtgggtgggaaaagctgggttgtgaagataacaggtcttggttgagtcatgattgaactc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gtgggtgggaaaagctgggttgtgaagataacaggtcttggttgagtcatgattgaactc 406

                                                                       
Query: 425 tcctgcagatgtcttccagcttcagaggaggaaactgaggcccagggccgtggcgggcaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tcctgcagatgtcttccagcttcagaggaggaaactgaggcccagggccgtggcgggcaa 346

                                                                       
Query: 485 ggtgtactctaactcagacttgagtcctctgattcttcacctagccttgcttgtctgtgg 544
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 345 ggtgtactctaactcagacttgaatcctctgattcttcacctagccttgcttgtccgtgg 286

                                                                       
Query: 545 tgcagccaatgcctctctcctcggcagaagctagtgaagctagctgaagaggagagagct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tgcagccaatgcctctctcctcggcagaagctagtgaagctagctgaagaggagagagct 226

                                
Query: 605 ccctagggtttttcctggagg 625
           |||||||||||||||||||||
Sbjct: 225 ccctagggtttttcctggagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no489_k12.g1 MSMg01no489_k12.g1 CHROMAT_FILE:
MSMg01no489_k12.g1 PHD_FILE: MSMg01no489_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:58 2005
         (313 letters)



>mm_chr3_106836209_106836921
          Length = 713

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagcaaatagaaaggccaaatgctaagactcacttgttgcttgcaaacctgatggtttta 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 gagcaaatagaaaggccaaatgctaagactcacttgctgcttgcaaacctgatggtttta 260

                                                                       
Query: 61  cttcgacttgaatactagggactgaaatgcaaagcaatcctgcacaggctctgagaagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcgacttgaatactagggactgaaatgcaaagcaatcctgcacaggctctgagaagct 320

                                                                       
Query: 121 gtttgctttgccacagttctacacttaaacattataataataatattattattatctcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttgctttgccacagttctacacttaaacattataataataatattattattatctcac 380

                                                                       
Query: 181 aggggtgtcatgaggattaatgagacattatcaaatcactttgagctactcccctggggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggggtgtcatgaggattaatgagacattatcaaatcactttgagctactcccctggggg 440

                                                                       
Query: 241 tactaaataaatggtatgtgtccccctgaagtgccacttttgacattgatttgtcgcaac 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 tactaaataaatggtatgtgtccccctgaagtgccacttttgacattgatttgttgcaac 500

                        
Query: 301 tggttctgctgtc 313
           |||||||||||||
Sbjct: 501 tggttctgctgtc 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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