BAC Information

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BAC

Clone NameMSMg01-489M18
Chromosome18 (Build37)3 (Build37)
Map Location 31,580,512 - 31,581,060128,153,888 - 128,154,485
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666100, EG666111, EG666114, LOC433168, Rit2, EG666130
Downstream geneSyt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489M18.T7 (MSMg01no489_m18.b1)MSMg01-489M18.TJ (MSMg01no489_m18.g1)
ACCAG568194AG568195
length793773
length of high quality
(start - end)		553 (47 - 599)598 (84 - 681)
definitionCHROMAT_FILE: MSMg01no489_m18.b1 PHD_FILE: MSMg01no489_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:10 2005CHROMAT_FILE: MSMg01no489_m18.g1 PHD_FILE: MSMg01no489_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:10 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,580,512 - 31,581,060)(128,153,888 - 128,154,485)
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTTGAAGCTGTTACCTCTGCGGAAAACACTAATTATAAA
TGGGATATATTCAAGACAAACATATAGACCTTTGCCCAAAATATCAACCC
CATTTATATGATAGTTATTAGCATCATAAATGTTTCTATAATATGATACA
TTTCAATTAAATTTAAAATGTTCTTATCACTCTACTCAAAATTCTTTGGG
AGATAAGCAATGATGAGTTTAGGTGACATAATCAGGAAACAAATATGGAA
TTTAGCTTTAAAGGTGAAAATATTGATGGAACATATACTTTATATCAAAC
TGTTTCACTATAAAGAAGTTAAAGGGAGGGATAGAATAAAACTACCATAC
ATATTAAACACTATGGCTGGTTAGAAGTTTCTGCATGCTATCTTACTGTT
TTGTGAAAGAATTCCTTGAGCTAAATTCCTTCCATTCTCCCCTGTCTCTC
ATTGCTGGAGTCACAGTTCTCCAAACTCTAAAAGAGTCTCATTTTATTCA
TAATCTTAACCCAGTTTCTCTTTGCTTTTTGCCACAGGGCTTTTTGGAAG
ACAGGGAAGAGCATTGTCTTTACATAGGCATAGCCTTGAAGGGTGTGAAA
AACAGTCTATATGGTGGCAGAAAATGTTCTGAATTGGTTCANGAATGGNA
TTAAATGCANGAATGGATTAAATGCCCACAGCAAAAGCCATCCCCTACAT
GCTTGNTAGTAACTTCTCCNNTTTGGCTCAACTGGATTCCAGN

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACTTGTTTCGTTCTG
TGCTATAAAAGACTGTCAAATGTCACACCCCAAGAGATGCAACAGGATTC
CACAGATTTATTTATTTCAAGCTCTGAAGTCTATTAGCAACAGTGCCCCT
TTGCTGTTGGAAATAGAGCTGCGAGGACATTAATTTCAGATATGACAACT
TGCTTTTCTGACAAATTAATGATAGACCTTCCTTAGTCCCATATTTATTT
ATTTTCCTAACATGAGGTACAATCACACTCACCAGTTCTTTAGATTTCAG
AAGACAAATATTTGACATAATTTGTCAGATAAACTGTTCGATCAACCATC
TATTTTTAACCAAGTTGTCCTATCCATGGGAATAAATGGAAACGTTCTGA
CAAAGCTTGAGCTTCTACTAACTCCGAACCTTAGCATTATGCAGATGCCT
GACAGCAAATTAAATCTATAAGTTTGTCTTCTGAGAACAACAGGAAACCT
CTCTCTATAAAACAATAAACTTTTGGGGAAATTAATTGAATGAGAATGGT
CATGCTATTCAGAATGTAAGGGACTGATTTTAGCTTTGTCCATGACAGCT
TTGAAGTGACAGACTGGGAATACATTTTAAAATGTCAGTGTCACATTGAA
ATACCATTTTGAAATATTAACTTTTGTATGTTATATTGACTAGAGATATT
CTTCTCATATTTTGTGATAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_m18.b1 MSMg01no489_m18.b1 CHROMAT_FILE:
MSMg01no489_m18.b1 PHD_FILE: MSMg01no489_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:10 2005
         (553 letters)



>mm_chr18_31580308_31581260
          Length = 953

 Score = 1038 bits (537), Expect = 0.0
 Identities = 546/549 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgttttgaagctgttacctctgcggaaaacactaattataaatgggatatat 64
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 753 gaattctttgttttgaagctgttacctctgcggaaaacactaattataaacgggatatat 694

                                                                       
Query: 65  tcaagacaaacatatagacctttgcccaaaatatcaaccccatttatatgatagttatta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tcaagacaaacatatagacctttgcccaaaatatcaaccccatttatatgatagttatta 634

                                                                       
Query: 125 gcatcataaatgtttctataatatgatacatttcaattaaatttaaaatgttcttatcac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gcatcataaatgtttctataatatgatacatttcaattaaatttaaaatgttcttatcac 574

                                                                       
Query: 185 tctactcaaaattctttgggagataagcaatgatgagtttaggtgacataatcaggaaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tctactcaaaattctttgggagataagcaatgatgagtttaggtgacataatcaggaaac 514

                                                                       
Query: 245 aaatatggaatttagctttaaaggtgaaaatattgatggaacatatactttatatcaaac 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 513 aaatatggaatttagctttaaaggtgaaaatattgatggaacatatactttatatcaatc 454

                                                                       
Query: 305 tgtttcactataaagaagttaaagggagggatagaataaaactaccatacatattaaaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tgtttcactataaagaagttaaagggagggatagaataaaactaccatacatattaaaca 394

                                                                       
Query: 365 ctatggctggttagaagtttctgcatgctatcttactgttttgtgaaagaattccttgag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctatggctggttagaagtttctgcatgctatcttactgttttgtgaaagaattccttgag 334

                                                                       
Query: 425 ctaaattccttccattctcccctgtctctcattgctggagtcacagttctccaaactcta 484
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 333 ctaaattccttccattctcccctgtctctcattgctggagtcagagttctccaaactcta 274

                                                                       
Query: 485 aaagagtctcattttattcataatcttaacccagtttctctttgctttttgccacagggc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aaagagtctcattttattcataatcttaacccagtttctctttgctttttgccacagggc 214

                    
Query: 545 tttttggaa 553
           |||||||||
Sbjct: 213 tttttggaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no489_m18.g1 MSMg01no489_m18.g1 CHROMAT_FILE:
MSMg01no489_m18.g1 PHD_FILE: MSMg01no489_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:10 2005
         (598 letters)



>mm_chr3_128153688_128154685
          Length = 998

 Score = 1149 bits (594), Expect = 0.0
 Identities = 597/598 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacttgtttcgttctgtgctataaaagactgtcaaatgtcacaccccaagagatgcaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacttgtttcgttctgtgctataaaagactgtcaaatgtcacaccccaagagatgcaac 260

                                                                       
Query: 61  aggattccacagatttatttatttcaagctctgaagtctattagcaacagtgcccctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggattccacagatttatttatttcaagctctgaagtctattagcaacagtgcccctttg 320

                                                                       
Query: 121 ctgttggaaatagagctgcgaggacattaatttcagatatgacaacttgcttttctgaca 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgttggaaatagagctgtgaggacattaatttcagatatgacaacttgcttttctgaca 380

                                                                       
Query: 181 aattaatgatagaccttccttagtcccatatttatttattttcctaacatgaggtacaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattaatgatagaccttccttagtcccatatttatttattttcctaacatgaggtacaat 440

                                                                       
Query: 241 cacactcaccagttctttagatttcagaagacaaatatttgacataatttgtcagataaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacactcaccagttctttagatttcagaagacaaatatttgacataatttgtcagataaa 500

                                                                       
Query: 301 ctgttcgatcaaccatctatttttaaccaagttgtcctatccatgggaataaatggaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgttcgatcaaccatctatttttaaccaagttgtcctatccatgggaataaatggaaac 560

                                                                       
Query: 361 gttctgacaaagcttgagcttctactaactccgaaccttagcattatgcagatgcctgac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttctgacaaagcttgagcttctactaactccgaaccttagcattatgcagatgcctgac 620

                                                                       
Query: 421 agcaaattaaatctataagtttgtcttctgagaacaacaggaaacctctctctataaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcaaattaaatctataagtttgtcttctgagaacaacaggaaacctctctctataaaac 680

                                                                       
Query: 481 aataaacttttggggaaattaattgaatgagaatggtcatgctattcagaatgtaaggga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aataaacttttggggaaattaattgaatgagaatggtcatgctattcagaatgtaaggga 740

                                                                     
Query: 541 ctgattttagctttgtccatgacagctttgaagtgacagactgggaatacattttaaa 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgattttagctttgtccatgacagctttgaagtgacagactgggaatacattttaaa 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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