Query= MSMg01no489_n01.b1 MSMg01no489_n01.b1 CHROMAT_FILE:
MSMg01no489_n01.b1 PHD_FILE: MSMg01no489_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:12 2005
(677 letters)
>mm_chr3_115016799_115017875
Length = 1077
Score = 1210 bits (626), Expect = 0.0
Identities = 663/676 (98%), Gaps = 4/676 (0%)
Strand = Plus / Plus
Query: 5 gaattcaatctttcctgaatgctatgtacttctgaacatgcagcatcttcaacctttttc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatctttcctgaatgctatgtacttctgaacatgcagcatcttcaacctttttc 264
Query: 65 agggttgatcaatatttcagctttataattgtcaatgttcagtctaccactttacactaa 124
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 agggttgatcaatatttcatctttataattgtcaacgttcagtctaccactttacactaa 324
Query: 125 tacataatacaagtgtagaattgttgatgaccctttcataaactgtgggaaatcctgtcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacataatacaagtgtagaattgttgatgaccctttcataaactgtgggaaatcctgtcc 384
Query: 185 taatcctaagccagaattcattctttcatggtacaaacttttaacaaattaggt-aattt 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 385 taatcctaagccagaattcattctttcatggtacaaacttttaacaaattaggtaaattt 444
Query: 244 ttttgtatactgtgttaaatgttttttagcattaaaggaaaataattgtcatgtgctttt 303
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 445 ttttgtatactgtgttaaatgttttttagcattaaaggaaaa-aattgtcatgtgctttt 503
Query: 304 ctgtataatctactatacttgtgacattaaccttcattcaaatccatggtaagccctctt 363
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgtataacctactatacttgtgacattaaccttcattcaaatccatggtaagccctctt 563
Query: 364 attcatgctatctgatgcttttaatgtgctgttgaatttagcttcttaatattagttgat 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggtcatgctgtctgatgcttttaatgtgctgttgaatttagcttcttaatattagttgat 623
Query: 424 ttttatatctcctcaactgagatattttgtttcttcacccataatataactagctagatt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttttatatctcctcaactgagatattttgtttcttcacccataatataactagctagatt 683
Query: 484 tcttttctgaagtaatcatgtttagctaggtttcaggctagtagtactcatctcaaaaaa 543
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 684 tcttttctgaagtaatcatgtttagcttggtttcaggctagtagtactcacctcaaaaaa 743
Query: 544 aa--gtttgaaatgttttctcctttttcttttaattggatattttacttatgaacattgc 601
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaaagtttgaaatgttttctcctttttcttttaattggatattttacttatgaacattgc 803
Query: 602 aaatgttatctcctttcctgatttcacacccagaaacctcctatcacatcccccccacct 661
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aaatgttatcttctttcctgatttcacacccagaaacctcctatcacatcccccccacct 863
Query: 662 cctgcttctatgaggg 677
||||||||||||||||
Sbjct: 864 cctgcttctatgaggg 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_n01.g1 MSMg01no489_n01.g1 CHROMAT_FILE:
MSMg01no489_n01.g1 PHD_FILE: MSMg01no489_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:12 2005
(650 letters)
>mm_chr3_115170413_115171464
Length = 1052
Score = 1044 bits (540), Expect = 0.0
Identities = 578/592 (97%), Gaps = 5/592 (0%)
Strand = Plus / Minus
Query: 61 cttccccccaccaattctttaaaaagtagaaaaaaaaaagataagaattacaaccagaga 120
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1052 cttcctcccaccaattctttaaaaagtag--aaaaaaaagataagaattacaaccagaga 995
Query: 121 gtgtaaacttcctttagtgaaaaatgtcatttttggcttttgtttgtgttcggagatggg 180
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 994 gtgtaaacttcctttagtgaaaaatgtcatttttgtcttttgtttgtgttcggagaaggg 935
Query: 181 aggcctgctctttcagtgtatgagtatgtaaaaagctttggcagtttgctgctactattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 aggcctgctctttcagtgtatgagtatgtaaaaagctttggcagtttgctgctactattt 875
Query: 241 ttatttatttatttatttttag-aaaaaactgaaaataaggaaaaaatggac--tttttt 297
||||||| |||||||||||||| |||||| ||||||||||||||||||| || ||||||
Sbjct: 874 ttatttacttatttatttttagaaaaaaaatgaaaataaggaaaaaatgaactttttttt 815
Query: 298 tctgtttacttgaaaaagaatcgtttggaaaacaatccactctttgcatgttaaccttgt 357
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 814 tctgtttacttgaaaaagaatcatttggaaaacaatccactctttgcatgttaaccttgt 755
Query: 358 taaattatatgcagatataatactgttctcccaggacacaaagcattttggttcttaaac 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 taaattatatgcagatataatactgttctcccaggacacaaagcattttggttcttaaac 695
Query: 418 acttgcgagaggtgccctgcttgagaagtacagatagctttcattagtgctaatgggagt 477
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 acttgcaagaggtgccctgcttgagaagtacagatagctttcattagtgctaatgggagt 635
Query: 478 tatgtttctgcaccaggagaaaatagagcctgcagagcttaaattatgcttgatgcaaat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 634 tatgtttctgcaccaggagaaaatagagcctgcagagcttaaattatgcttgatgcagat 575
Query: 538 cttccagatggaataaattatgagggatgcttagagggaaaagatctaaatatcccccca 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cttccagatggaataaattatgagggatgcttagagggaaaagatctaaatatcccccca 515
Query: 598 agccatagcttaatagcaaagcagtggttctgagtaatgggagtggagtcaa 649
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 agccatagcttaatagcaaagcagtggttctgagtaatgggagtggagtcaa 463
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1052
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1042
Effective search space: 666880
Effective search space used: 666880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
