GGGTGAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTGATTTTTCCAAGACTTTTATCATGAATGGGTGTTGGATCTT
GTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTT
TGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCATATATTAAAC
CATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGC
TTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGTATTTTTG
CATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTAACTTTGTTGGA
TCTTTCTGTGGTTTAGGTACCAGAGACACTGAAACTTATAGAGGAGAAAG
TGGGGGAAAGCCTTGAAGATATGGGCATAGGGGAAAAATTCCTGAATAAA
ACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTTAT
GAAAGTCCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAA
GACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGG
GGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAA
ATCAAATAACCCCATTAAAAATGGGGCTCAAAACTGAACAAAGAATTCTC
ACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACAA
TCAGGGAAATGCAN

NNNNNCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATATCACAACCCAGAAATA
AAGGATCCATTCATTCAGCATTCTTTGTGGAAGATGCTATGTAGATACTA
CAAGTAATTTGTTGAGAAAATATTGAAATATGCCAATGCAGTTCAGCTTT
GACAGAATAGAAAAATATTGACTATTCAGGCTTCTTAATATATATGGCTT
TAAAAATTACACTTCATCAATATTTTACAGATGTCAGAAAATGTAATAGC
TTCTTCTTTGGCTGTTTTGTGGTTGTCAGTAAGGAGGACATGACTGTCAT
AAGTACATCGAATGTAGTGGTGAATATCGGAGGATCCTATGAATTGGTAT
TTCATAACCACATTTTTTTCAAAACTTGTGGTATTTCAAAACTTCAAGTT
TTTCTCTTGTCTTACATGTTGGGGTGTTTGTGATGTGTTGTGTGGTGCAC
ACCTGTGTGTAGGCATGATACTTGCTTGTAGAAGAGGTAGACATGCAGTG
TTTTCTCTACTGCTCTCTATCTGATGGCCTTTCATTGAACCTCAGGTCAC
ATTCTCAGCTAGGATGGCCTGCCAGTGGGCATGTGCAAGCCACCGGTCCC
CCTCTCACTGCTGGTTCACAGGAGCACACAGGTAGTTCTGATCATCAAGA
CTTTTCATGACAGCTGACTTCAGAGAGAGTCCCAAGGATGTCCAAAGCTG

Query= MSMg01no490_a06.g1 MSMg01no490_a06.g1 CHROMAT_FILE:
MSMg01no490_a06.g1 PHD_FILE: MSMg01no490_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:28 2005
         (669 letters)



>mm_chr3_55661510_55662579
          Length = 1070

 Score = 1288 bits (666), Expect = 0.0
 Identities = 669/670 (99%), Gaps = 1/670 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatcacaacccagaaataaaggatccattcattcagcattc-tttgtggaagatgctat 59
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 870 atatcacaacccagaaataaaggatccattcattcagcattcttttgtggaagatgctat 811

                                                                       
Query: 60  gtagatactacaagtaatttgttgagaaaatattgaaatatgccaatgcagttcagcttt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 gtagatactacaagtaatttgttgagaaaatattgaaatatgccaatgcagttcagcttt 751

                                                                       
Query: 120 gacagaatagaaaaatattgactattcaggcttcttaatatatatggctttaaaaattac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gacagaatagaaaaatattgactattcaggcttcttaatatatatggctttaaaaattac 691

                                                                       
Query: 180 acttcatcaatattttacagatgtcagaaaatgtaatagcttcttctttggctgttttgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 acttcatcaatattttacagatgtcagaaaatgtaatagcttcttctttggctgttttgt 631

                                                                       
Query: 240 ggttgtcagtaaggaggacatgactgtcataagtacatcgaatgtagtggtgaatatcgg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ggttgtcagtaaggaggacatgactgtcataagtacatcgaatgtagtggtgaatatcgg 571

                                                                       
Query: 300 aggatcctatgaattggtatttcataaccacatttttttcaaaacttgtggtatttcaaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aggatcctatgaattggtatttcataaccacatttttttcaaaacttgtggtatttcaaa 511

                                                                       
Query: 360 acttcaagtttttctcttgtcttacatgttggggtgtttgtgatgtgttgtgtggtgcac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 acttcaagtttttctcttgtcttacatgttggggtgtttgtgatgtgttgtgtggtgcac 451

                                                                       
Query: 420 acctgtgtgtaggcatgatacttgcttgtagaagaggtagacatgcagtgttttctctac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 acctgtgtgtaggcatgatacttgcttgtagaagaggtagacatgcagtgttttctctac 391

                                                                       
Query: 480 tgctctctatctgatggcctttcattgaacctcaggtcacattctcagctaggatggcct 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgctctctatctgatggcctttcattgaacctcaggtcacattctcagctaggatggcct 331

                                                                       
Query: 540 gccagtgggcatgtgcaagccaccggtccccctctcactgctggttcacaggagcacaca 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gccagtgggcatgtgcaagccaccggtccccctctcactgctggttcacaggagcacaca 271

                                                                       
Query: 600 ggtagttctgatcatcaagacttttcatgacagctgacttcagagagagtcccaaggatg 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ggtagttctgatcatcaagacttttcatgacagctgacttcagagagagtcccaaggatg 211

                     
Query: 660 tccaaagctg 669
           ||||||||||
Sbjct: 210 tccaaagctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1070
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1060
Effective search space:   698540
Effective search space used:   698540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)