Query= MSMg01no490_j23.b1 MSMg01no490_j23.b1 CHROMAT_FILE:
MSMg01no490_j23.b1 PHD_FILE: MSMg01no490_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:15 2005
(623 letters)
>mm_chr3_88516604_88517626
Length = 1023
Score = 1135 bits (587), Expect = 0.0
Identities = 614/624 (98%), Gaps = 4/624 (0%)
Strand = Plus / Minus
Query: 1 cagctacacacattgtggaacaaaagtgtattcattaatctctttaagatttatttttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 cagctacacacattgtggaacaaaagtgtattcattaatctctttaagatttatttttct 842
Query: 61 ctggccgggtgtggcggcgcacgcctttaatcccagcactcaggaggcagaggcaggtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ctggccgggtgtggcggcgcacgcctttaatcccagcactcaggaggcagaggcaggtgg 782
Query: 121 atttctgagttcgaggttggccgtggtctacagagtgagttccaggacagccagtgctat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 781 atttctgagttcgaggttggccgtggtctacagagtgagttccaggacagccagggctat 722
Query: 181 acagagaaaccctgtctcaaaaaaaaaaaaaaatttatttttctctggatgtatttgtaa 240
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 acagagaaaccctgtctc--aaaaaaaaaaaaatttatttttctctggatgtatttgtaa 664
Query: 241 ctanatgnt-ttgcatggcccccttggaggctagaagagcatacagtgagaccctatctc 299
||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ctatatg-tattgcatggcccccttggaggctagaagagcatacagtgagaccctatctc 605
Query: 300 aaaaacaaaacaaagtaaaccactgaaggggaaaaataaaaaacacaaaacatgtaactt 359
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 604 aaaaacaaaacaaagtaaaccactgaaggggaaaaataaaaaatagaaaacatgtaactt 545
Query: 360 aataataattataaatccttttatattaaggatatatttttcagagttatcagctcaagg 419
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aataataattgtaaatccttttatattaaggatatatttttcagagttatcagctcaagg 485
Query: 420 agcatatgcaaatgctggagcctgttatgttcttgttgggcagggtttatgcaatgaata 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agcatatgcaaatgctggagcctgttatgttcttgttgggcagggtttatgcaatgaata 425
Query: 480 caaaagcatattaagggggtggagagatgactcaaagggaaaagcactacgtcagaggat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 caaaagcatattaagggggtggagagatgactcaaagggaaaagcactacgtcagaggat 365
Query: 540 ccagcttcaattcccatttgccacacagcaactcatatctacatacattactccagctcc 599
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 364 ccagcttcaattcccatttgccacacaacaactcatatctacatacattactccagctcc 305
Query: 600 aagggatctgatccctcccacaca 623
||||||||||||||||||||||||
Sbjct: 304 aagggatctgatccctcccacaca 281
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_j23.g1 MSMg01no490_j23.g1 CHROMAT_FILE:
MSMg01no490_j23.g1 PHD_FILE: MSMg01no490_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:16 2005
(583 letters)
>mm_chr3_88316249_88317231
Length = 983
Score = 1023 bits (529), Expect = 0.0
Identities = 570/593 (96%), Gaps = 16/593 (2%)
Strand = Plus / Plus
Query: 1 gtgatggagggcctggaccacatctgcagtgcaggcccagactctgaagtggagagctgg 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 197 gtgatggagggcctggaccacatctgcagtgcaggcccagactttgaagtggagagctgg 256
Query: 61 gtagacagaactgaggagaggggcaactactctgccagactccagtacatcagtcccaga 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gtagacagaattgaggagaggggcaactactctgccagactccagtacatcagtcccaga 316
Query: 121 tcttggtggggcaaatatttacccgatgacaacagttgctaggcaggcaggaaggaggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcttggtggggcaaatatttacccgatgacaacagttgctaggcaggcaggaaggaggat 376
Query: 181 ggaggccaatagctggaggctcttccaggctccgccccaaccctcctttaaaaaaaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggaggccaatagctggaggctcttccaggctccgccccaaccctcctttaaaaaaaaaaa 436
Query: 241 aatttttt----------cttggaaggtgagccttagacttcgctctggccctcacctga 290
|| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aa------aaaaaacaggcttggaaggtgagccttagacttcgctctggccctcacctga 490
Query: 291 gtcctggaggctcaactggccctgtgcaccatatatcaactggcaacaggcacgatagct 350
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 491 gtcctggaggctcaactggccctgtgcaccatatatcaactggcaacaggcaggagagct 550
Query: 351 agctgaacaaggggaaatttttaattgcaggctttccctgcgctccagttagctctgggg 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agctgaacaaggggaaatttttaattgcaggctttccctgcgctccagttagctctgggg 610
Query: 411 aacagaagctgtgtaatgagtgccaccttctcgaggggggagtgggctgccaggaggcag 470
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 611 aacagaagctgtgtaatgagtgcccccttctcgaggggggagtgggctgccaggaggcag 670
Query: 471 ggactgagtgagggaagacacgctgaggggaagtcaagatgatgtctgggcaggaggagg 530
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 671 ggactgagtgagggaagacacgctgaggggaagtcaggatgatgtctgggcaggaggagg 730
Query: 531 gagagcgtgccattagagccttctatggggtggtgggggcgggggtccgagaa 583
||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 731 gagagcgtgccattagagccttctatggggtggtgggggcgggggtctgagaa 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
