Query= MSMg01no490_m07.b1 MSMg01no490_m07.b1 CHROMAT_FILE:
MSMg01no490_m07.b1 PHD_FILE: MSMg01no490_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:27 2005
(384 letters)
>mm_chr3_114074604_114075388
Length = 785
Score = 706 bits (365), Expect = 0.0
Identities = 380/385 (98%), Gaps = 1/385 (0%)
Strand = Plus / Plus
Query: 1 caatagaaaaaaaa-tgatgtttgtaatcagtcaccaacagttactgacagccacatgct 59
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatagaaaaaaaaatgatgtttgtaatcagtcaccaacagttactgacagccacatgct 260
Query: 60 aaaagtgagaaacttcagaagagaaagaaagcccagaaaagcatacctaggtcttggcaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagtgagaaacttcagaagagaaagaaagcccagaaaagcatacctaggtcttggcaa 320
Query: 120 gtatcagtaaataagaaatgacagaaaaaaaaggaggaaaaacaagtaattttgcagtaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatcagtaaataagaaatgacagaaaaaaaaggaggaaaaacaagtaattttgcagtaa 380
Query: 180 tttagaaaaacaggcaggccttcgtagtctgcatgaccacaactctgtaagtgacaatac 239
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 tttagaaaaacaggcaggccttcgttgtctgcatgaccacaactctgtaagtgacaatac 440
Query: 240 caaggagcaggtttctagtatgaaaaagtgccttatctaatatcatattggggaggaaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaggagcaggtttctagtatgaaaaagtgccttatctaatatcatattggggaggaaag 500
Query: 300 ataaagtagtaatgtaaattataataatttaaataaataaaaatatgacaagtgttttaa 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 ataaagtagtaatgtaaattataataacaaaaataaataaaaatatgacaagtgttttaa 560
Query: 360 aaagtgatgagttctttactaagag 384
|||||||||||||||||||||||||
Sbjct: 561 aaagtgatgagttctttactaagag 585
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 785
Length adjustment: 9
Effective length of query: 375
Effective length of database: 776
Effective search space: 291000
Effective search space used: 291000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_m07.g1 MSMg01no490_m07.g1 CHROMAT_FILE:
MSMg01no490_m07.g1 PHD_FILE: MSMg01no490_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:27 2005
(670 letters)
>mm_chr3_114241409_114242478
Length = 1070
Score = 1060 bits (548), Expect = 0.0
Identities = 590/604 (97%), Gaps = 2/604 (0%)
Strand = Plus / Minus
Query: 22 ggatcaggtagatgctggcagatataataaaaacaagccaacaaacataaagacatgaaa 81
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 603 ggatcaggtagatgctggcagatataataaaaacaagccaacaaacataaagacat-aaa 545
Query: 82 aa-tgctataaaatagaaaattcgaaagagaaaatcaagtccacaaaacaataaaaatgt 140
|| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 544 aattgctataaaatagaaaattcgaaagagcaaatgaagtccacaaaacaataaaaatgt 485
Query: 141 tattaaagaaattaagtctttgaagacttcagtatttagaagtgattactgtacttaaag 200
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 484 tattaaagaaattaagtctttgaagacttcaggatttagaagtgattactgtacttaaag 425
Query: 201 ttggtatagatttattttatgtggaagacaaagagaaatggggtattcaatagacgagaa 260
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 424 ttggtataaatttattttatgtggaagacaaagagaaatggggcattcaatagacgtgaa 365
Query: 261 agaaagtaaaattcagagaaagtaggagggaattacattttgagtataagcatcgagatc 320
|||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 364 agaaagtacaattcagagaaaataggagggaattacattttgagtataagcatggagatc 305
Query: 321 aggttttcatcacaacaggaagatttgattggcgttcatttttcctaagaaggatgaggg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 304 aggttttcatcacaacaggaagatttgattggcgttcatttttcctaagaaggatgaagg 245
Query: 381 cagttcatcagcgaagagattggctctggctactgtcagctgcttgggtggaggcatgaa 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cagttcatcagcgaagagattggctctggctactgtcagctgcttgggtggaggcatgaa 185
Query: 441 ataggcaagtaattatatacaacctgagctaggaatttgcagatgactgtggaagagaga 500
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 184 ataggcaagtaattatatacaacctgagttaggaatttgcagatgactgtggaagagaga 125
Query: 501 aaaataatacgatcagggtgtttgcaactgaatgattataggtttgatccatgacatctt 560
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aaaataatatgatcagggtgtttgcaactgaatgattataggtttgatccatgacatctt 65
Query: 561 agataaaacatagaggaataaagatataaataagagctcaaattctaacttttgccaata 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 agataaaacatagaggaataaagatataaataagagctcaaattctaacttttgccaata 5
Query: 621 ctac 624
||||
Sbjct: 4 ctac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
