BAC Information

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BAC

Clone NameMSMg01-490N01
Chromosome3 (Build37)
Map Location 105,612,422 - 105,612,743
singlet/doubletsinglet
Overlap genenone
Upstream geneMov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik, 1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a
Downstream geneEG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490N01.T7 (MSMg01no490_n01.b1)MSMg01-490N01.TJ (MSMg01no490_n01.g1)
ACCAG568956AG568957
length757759
length of high quality
(start - end)
371 (325 - 695)339 (78 - 416)
definitionCHROMAT_FILE: MSMg01no490_n01.b1 PHD_FILE: MSMg01no490_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:31 2005CHROMAT_FILE: MSMg01no490_n01.g1 PHD_FILE: MSMg01no490_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAGAACACGGCGGA
ATCAAATGGTTACTAACAACCTTAGNCTTTTTTTTTCTTATTTCTAAAAC
CAAAATATATTTCATTGTAGCTACTTTGAAGGTAAAAAAAAAATGCATGT
ATAAAATTGTCAAAGAATAAAATCTTTTAGAACATGCTTCACATCAGGTA
TCAATTGGGATAAATTGAAACACAACTGTTTATTTGGAATAAAAGAAAAA
AACCTATGCTTCCATTTGTGTTTGTTTGCTTGATTGGTTGGTGATATTGG
AGCCCTGATGAGGGCATATTATATCAAGGCTGGCCTTGAATTCCTGAATC
CCTTAATGTCCATCTCCTAAATGATAGAATTTATTTATTAAATGTAAGTA
CACTCTAGCTGTCTTCAGACACACCAGTAGAGGGCACCCAATCTCATTAA
AGATGGTTGTGAGCCACCATGTGGTTGTTGAGATTTGAACTCAGGACCTT
CGGAAGAGCAATCCATGCTCTTACCCGCTGAGCCATCTCTCCAGCCCAAG
TGATAGAATTTTATTTTGACTTTTGAGACAGGATCTCTGTATCCTTGCTG
GCCTGGTGCTCAGTTTGTGTACCCAGCTGACTTTGAACTTGTGGACATTC
TGCTTCTGACAATTTCTTTTTCCTTTTTTTTTTTTTTTTTTTTTAGATTT
ATTTTAAGTATTTATATGAGTATACTGTGGCTGTCTTCAGACACACCCAC
AAGAGTA
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTTAAAGGTGTTCTAAGCTG
CAAGTTGTCAGTGAGAGATTTGGTTAAATATTTGCAAAATACTCCTTAAA
TGTTTACTAGATGAAAGTCTGAAGCCAGAGGGCTGAGAACATAGGCTCAG
AAGTACAGCACTTGCTTATGGGACACTAGGTCTCATCCCTATGACAGGAA
AAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA
AGGAAGGAAGGAAGGAAAGTTGCACTTTTCAAGAAGTACCAACTTGAATA
GAACCTTCCAGTTCTTGCATATAGAATTCTATTAACACACCACACACACA
CACACACACACACACACACACACAATTCTCACTCCAGGTAAGTCACCTGT
ATGCTTCTGAGTATCTGCTCCTAAGTATGTAACAATAACAGTTTGCCTCA
GAGAATGAAATGAAGAGTCTGTCATTCCAGACACTATAGTATTGGCTTTT
GAATAAGCACTCAATAAATGCTCGTTACAATCAGACTATTGATTCATTAA
AAAGATGTGCCAGATCAGCTTTAAAGAAACATTCAAGGAGTTTAGGAGAT
GGCTCAATGAATGACATGCTTACTGTGCAACCATGAGACTCAGAATTTGA
TCCACAGCATGCGTGGGAAAAGCTTGTCTCAGTGGTCCACACTGGTAAGC
TAAGGACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_n01.g1 MSMg01no490_n01.g1 CHROMAT_FILE:
MSMg01no490_n01.g1 PHD_FILE: MSMg01no490_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:31 2005
         (339 letters)



>mm_chr3_105612221_105612959
          Length = 739

 Score =  557 bits (288), Expect = e-163
 Identities = 318/338 (94%), Gaps = 16/338 (4%)
 Strand = Plus / Plus

                                                                       
Query: 2   gttttaaaggtgttctaagctgcaagttgtcagtgagagatttggttaaatatttgcaaa 61
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gttttaaaggtgttttaagctgcaagttgtcagtgagagatttggttaaatatttgcaaa 261

                                                                       
Query: 62  atactccttaaatgtttactagatgaaagtctgaagccagagggctgagaacataggctc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atactccttaaatgtttactagatgaaagtctgaagccagagggctgagaacataggctc 321

                                                                       
Query: 122 agaagtacagcacttgcttatgggacactaggtctcatccctatgacaggaaaaaagaag 181
           ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 322 agaagtacagcgcttgcttatgggacactaggtctcatccctacgacaggaaaaaagaag 381

                                                                       
Query: 182 gaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaa 241
           |||||||||||||||||||||||||||||||||||||||||||                |
Sbjct: 382 gaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaa----------------a 425

                                                                       
Query: 242 gttgcacttttcaagaagtaccaacttgaatagaaccttccagttcttgcatatagaatt 301
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 426 gttgcacttttcaagaagtaccaacttgaatagaacctttcagttcttgcatatagaatt 485

                                                 
Query: 302 ctattaacacaccacacacacacacacacacacacaca 339
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctattaacacaccacacacacacacacacacacacaca 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)