NNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCCAGAGTGTCCTAACTCTGCTTTGTTGAATAAGCGTAAATGCT
AATGTAAGTGGTTGTATGTGTATAATGCCAGAAAGAATCACCTCAAATTA
AATGTTTTAGGAGATTTATCATTGACTGGACTACACATAACAAGTTGGAT
ATATTTACCTCCAAGAAATTGTCCACTTGTTTGATAAAGCCAAAAAACAA
TCAACCTACACAACAGGTGATGTCTTATTTAACTAGGAAACAACTATTAA
GGCTCCTTTGATAAATCTACATCTAAATTCTTTGCTGAAGTCATATACCA
TAACTGTGATTCTTTTTAAAATCACTGGTTGTACTTTAAAAGTGGTAAAA
ATACTTCAAGTTATTATTTTATTTATACACAAGAAATTAAAAGTCACTTA
TTAAAGAAACTGTACTATTACATTTTATTCTCTTTCTTTTTAGTTACTTA
CTTGGTCTGAAATGGGTATATTAATTCTTCCTACACTCATATACCTTCCC
AGATAGTTCTATTGTTCTGTAAACAAACACTCAATAATGTAAAACACTCC
TTCCAGATATTGCAATGGATGGAGGACCAAACATTGTTTAATGAAAAACC
TCTTCCTTGGGGAAGGCTTTAGTATTAACCATTTCTTGGAAATTTTATTG
ACAGGTAAGTTGGTATCCTGGCTTTATATAAAGGAGGCATATCCAACCTA
TAGCTTGCGAGGTGC

NCATACAGTGGNAGCCTGGCGGCGCCTGTTTCAAAATTTAGGTGACCTAT
CTAATTACCGCAGATTTCTGTAAAATAAAGTTGGCTTCTGCTACTGGTTA
TCTATCTTGTGAATTTCTCAAAGAACATGTTCTCGATGTGGGGCTGGTGT
AAGTAGNCCNTCTGNTTTCCCTCTGTTTAAATCCCACCGNNAANTTGAAT
ATTTCCGCGCCTTCAACCCCTATTGGGGAAATTTGCTCCTCTTTGGCCAA
AACTTAAGGGGCCGGAAGGCCCCCTTTTTTTTTTCAAAAAGCCCAAAATT
TTTGCCAATTTGTTTTTTATTATAAAAAACATTTTTTTTTCCCCAAAAAA
AAAAGCCCCCCCCTCTTTCTTTTTTAAACCACCCCCCCCCAAACAAATTT
TTTTTTTTTTTTCCCACCTTTTTAACACAAAAAAAAAACTCAAAAAAAAC
AAAAAAACNNCCNNNNNNNCNNNNNAAAAACACCNCCCCCCCAAAAAAAA
ACAAAAAAGATATTTTAATACAAAAACACCCCCCCCCCTTTNNNNNNNCC
CCCNCNCCCCCCTTCANNNNNNNNNNNNNNNNNNAAAAAAAGGAAAAACC
NNAAAAACTAATCTACTTTCCTCTTCGGCGTATTTCATCTGAGGTTATCC
TTTGGGAGGTGTTAACTAAAGGCTTTGAAATAAATCCATCTAANAACCCC
TTTATTAATTAATAACCTTCCTTAATCTTCTAACTCAACTAAACCTGTTT
TCTTTGCTTATAATTGAATAAACCCNCNANAGNNANNATCTTTCACTTTT
TATCTAATAAATATTATTATTTTT

Query= MSMg01no490_n23.b1 MSMg01no490_n23.b1 CHROMAT_FILE:
MSMg01no490_n23.b1 PHD_FILE: MSMg01no490_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:35 2005
         (639 letters)



>mm_chr3_140417230_140418268
          Length = 1039

 Score = 1098 bits (568), Expect = 0.0
 Identities = 593/606 (97%), Gaps = 8/606 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   taactctgctttgttgaataagcgtaaatgctaatgtaagtggttgtatgtgtataatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 taactctgctttgttgaataagcgtaaatgctaatgtaagtggttgtatgtgtataatgc 547

                                                                       
Query: 61  cagaaagaatcacctcaaattaaatgttttaggagatttatcattgactggactacacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cagaaagaatcacctcaaattaaatgttttaggagatttatcattgactggactacacat 487

                                                                       
Query: 121 aacaagttggatatatttacctccaagaaattgtccacttgtttgataaagccaaaaaac 180
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aactcgttggatatatttacctccaagaaattgtccacttgtttgataaagccaaaaaac 427

                                                                       
Query: 181 aatcaacctacacaacaggtgatgtcttatttaactaggaaacaactattaaggctcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aatcaacctacacaacaggtgatgtcttatttaactaggaaacaactattaaggctcctt 367

                                                                       
Query: 241 tgataaatctacatctaaattctttgctgaagtcatataccataactgtgattcttttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgataaatctacatctaaattctttgctgaagtcatataccataactgtgattcttttta 307

                                                                       
Query: 301 aaatcactggttgtactttaaaagtggtaaaaatacttcaagttattattttatttatac 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaatcactggttgtactttaaaaatggtaaaaatacttcaagttattattttatttatac 247

                                                                       
Query: 361 acaagaaattaaaagtcacttattaaagaaactgtactattaca--------ttttattc 412
           ||||||||||||||||||||||||||||||||||||||||||||        ||||||||
Sbjct: 246 acaagaaattaaaagtcacttattaaagaaactgtactattacattcggctgttttattc 187

                                                                       
Query: 413 tctttctttttagttacttacttggtctgaaatgggtatattaattcttcctacactcat 472
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 186 tctttctttttagttacttacttggtttgaaatgggtatattaattcttcctacactcat 127

                                                                       
Query: 473 ataccttcccagatagttctattgttctgtaaacaaacactcaataatgtaaaacactcc 532
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 126 ataccttcccagatagttctattgttctgtaaataaacactcaataatgtaaaacactcc 67

                                                                       
Query: 533 ttccagatattgcaatggatggaggaccaaacattgtttaatgaaaaacctcttccttgg 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  ttccagatattgcaatggatggaggaccaaacattgtttaatgaaaaacctcttccttgg 7

                 
Query: 593 ggaagg 598
           ||||||
Sbjct: 6   ggaagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)