MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-491A14
Chromosome	3 (Build37)
Map Location	34,360,383 - 34,360,654
singlet/doublet	singlet
Overlap gene	EG665636
Upstream gene	EG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727
Downstream gene	EG622074, Sox2, LOC100041108
Link	Open Mouse BAC browser

no map image available.

Click to get alignment info.

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-491A14.T7 (MSMg01no491_a14.b1)	MSMg01-491A14.TJ (MSMg01no491_a14.g1)
ACC	AG569125	AG569126
length	845	1,359
length of high quality (start - end)	279 (32 - 310)	---
definition	CHROMAT_FILE: MSMg01no491_a14.b1 PHD_FILE: MSMg01no491_a14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:49 2005	CHROMAT_FILE: MSMg01no491_a14.g1 PHD_FILE: MSMg01no491_a14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:49 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTTCCTCT CTCTCCATCCTCTCTGGAACTGAGCAGGATATAAACCATCAAAAGATCTC ATGACTGTTGTCTTCATTTGTGTGCCCACTGAGAAGCCCACCGTACTCCA ATGGACAGTTCCAAACTAACAGTCACAAGAACAGCCCTCCTTAAAGTCAG TGGTCACAGAAGAAACCCCGGAAAATGAATGGAGGCAAAGAGCATGTGGG AGAACTGGGGAAGGGACAGTGGGGGTGGGAGGAAGGGTTTGGGGTGGGAA GGACATTTTTTTTTTTANANNNNNNNNNNNNNNNNNATANANAAAATTTA TTAATTTATTTTTTTATTTTTTTNTTTTTTTTTAATATTTTTATGTATTT TTTTTTTTACCCACCNAAAATATATTTTATTAACAATTTTTTTCTTCTTT TATTATATTACTTTATTATCTTACTGTATATTTTTCTTTTTATACTCTAT TCTTATTCTCAATTCATTCTTTTCTCACTTTTTCTTTATTACTTTTCTAT TTTCTCTTTCTTCCTGATTTTTAATTAATTCTATTTGATGTGAGGTTGGT TTAACTGGATGGGTTTTTTTACTTTGTTTTTTTGGAATTTTTTTCTTCTT TTATTTCATCACCACTATTATTTATGTTTGTTTATACTGAGGATATTTTA GTTGTATATTATTTTTTTTTGGTTGTATGTTCAGCTTTATGTCTTGTCTC TCCTGTTATATTTTTTTGTTCATTTGTTTTTATTGAATTTGCTCTTATGG TTTATACCTCTTATATTTATGTGATATGCTTTTATGTTATCTTTG	AGATATAGTATAGAGTGAGAAAANTCATTCTCTACTCCTCCCAACAGCGG GTCGCNCTCTNCTTCAGATCTCTCTCCTCTCTCACTCACAGCGCGTCCAC GCTCTAACATAGACTCACTACACACGCACACACAACCCAGACATGTAGGA CATCAGCTGCCTGTTACAACTTCACTCCTACTACTCAGTCTACTCATACA CTTCTCATACATATCACATATAGATGTACTATAGTATTATATAGCATGAT TGCAGGCTATATATAGTTACTCCTGCATGGTGCGACGCATAGGAGATCCG TATTAGTATCGCTGTATGATGGTGGACGATGGGGAGGCATGGTGCGAATA GCGATGTGACGAGCGTAGAGTGAGGTGTGAATACATATACGACAGATAGA TATACTCGCTGTGTGCACTCTTGTATCCCCACGCGATGAAGCAACTACGG CGCTCCTCGGCTACTCACGCCGATCGTGTACCGTGACGCTCTCGATAATA TCGATCTGCTCGGCTGTCGGGATCACCACTCCTACGTACAATGTACCGAC TGGCGCCTGCCGTCCNTATCNGATGCGCCTCGCTNTGATGGTATCTGAGG GTACAGTATTCCCCTGCCTCGTGCGCTGTCATATGCATCCTCAACAGTAT GACGACANTCTCACTGTATCGTCTAATACAACTAAATTTACTCATCTCGT GACTAGTGTACTATCGTGTATGCTGAATCTCGCTCATCTTCTCACACCTA TCACTTCATATCAGCCTCGTGCGCATGTGTGATCTGTTATCCTCGATACC ATCTGCGTCGCGCTACATGCACGTCTACCAGCATGCGCTCTGACGTTGTA TACAGGTGTGTACTCGCGACGTTACGGGTGGCTGTCNGTCTAGTCTGTGC TATATACGGCTCGATTGCGATAGAGCAGCCGACGCGTCTCAGTCGTTAGT CACGCTTCAGTGGTGCGAGATAGATGTGTCACGAACTCTACGTGCGACGN GATGACGTGCATAGCGGCATCGATACCTCATATCTTTATGTANCTGCCAC TCGATGTAAATCTAGATCGCTAGTCACTCACGACACACTACCACAGATCC NTGCTGTGAGCGCATACGATAGGGTGTAGTGAGAGATCACTAGCNCGCGC AGNAGCGTCTGCGACACCGTCTGATGTGCTATTACGATCGCCCATTCCTA TCTTGTATCAGTCGCACTCGACATCAGTACCAGTATGCGTGTAGCGCGCG TGACGCNTGTCTCGAGCAGTACGAGCACTCACATACATGCCTAGTAGACG CTNGAGCTCCTGTGCGCGCATCATGACATANACACAAGTGACTTGAGACT AGTTAGACN
quality values	Open. 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Alignment Information

BAC End 1	BAC End 2
Query= MSMg01no491_a14.b1 MSMg01no491_a14.b1 CHROMAT_FILE: MSMg01no491_a14.b1 PHD_FILE: MSMg01no491_a14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:49 2005 (279 letters) >mm_chr3_34360179_34360858 Length = 680 Score = 487 bits (252), Expect = e-142 Identities = 267/272 (98%), Gaps = 1/272 (0%) Strand = Plus / Minus Query: 5 gaattcccttcctctc-tctccatcctctctggaactgagcaggatataaaccatcaaaa 63 \|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 476 gaattcccttcctcacatctccatcctctctggaactgagcaggatataaaccatcaaaa 417 Query: 64 gatctcatgactgttgtcttcatttgtgtgcccactgagaagcccaccgtactccaatgg 123 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 416 gatctcatgactgttgtcttcatttgtgtgcccactgagaagcccaccgtactccaatgg 357 Query: 124 acagttccaaactaacagtcacaagaacagccctccttaaagtcagtggtcacagaagaa 183 \|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 356 acagtttcaaaccaacagtcacaagaacagccctccttaaagtcagtggtcacagaagaa 297 Query: 184 accccggaaaatgaatggaggcaaagagcatgtgggagaactggggaagggacagtgggg 243 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 296 accccggaaaatgaatggaggcaaagagcatgtgggagaactggggaagggacagtgggg 237 Query: 244 gtgggaggaagggtttggggtgggaaggacat 275 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 236 gtgggaggaagggttgggggtgggaaggacat 205 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.34 0.600 1.10 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 2, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 15 Number of extensions: 1 Number of successful extensions: 1 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 279 Length of database: 680 Length adjustment: 9 Effective length of query: 270 Effective length of database: 671 Effective search space: 181170 Effective search space used: 181170 X1: 7 (13.9 bits) X2: 517 (999.5 bits) X3: 517 (999.5 bits) S1: 7 (14.4 bits) S2: 7 (14.3 bits)

BAC End 1

BAC End 2

Query= MSMg01no491_a14.b1 MSMg01no491_a14.b1 CHROMAT_FILE:
MSMg01no491_a14.b1 PHD_FILE: MSMg01no491_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:49 2005
         (279 letters)



>mm_chr3_34360179_34360858
          Length = 680

 Score =  487 bits (252), Expect = e-142
 Identities = 267/272 (98%), Gaps = 1/272 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccttcctctc-tctccatcctctctggaactgagcaggatataaaccatcaaaa 63
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gaattcccttcctcacatctccatcctctctggaactgagcaggatataaaccatcaaaa 417

                                                                       
Query: 64  gatctcatgactgttgtcttcatttgtgtgcccactgagaagcccaccgtactccaatgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gatctcatgactgttgtcttcatttgtgtgcccactgagaagcccaccgtactccaatgg 357

                                                                       
Query: 124 acagttccaaactaacagtcacaagaacagccctccttaaagtcagtggtcacagaagaa 183
           |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 acagtttcaaaccaacagtcacaagaacagccctccttaaagtcagtggtcacagaagaa 297

                                                                       
Query: 184 accccggaaaatgaatggaggcaaagagcatgtgggagaactggggaagggacagtgggg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 accccggaaaatgaatggaggcaaagagcatgtgggagaactggggaagggacagtgggg 237

                                           
Query: 244 gtgggaggaagggtttggggtgggaaggacat 275
           ||||||||||||||| ||||||||||||||||
Sbjct: 236 gtgggaggaagggttgggggtgggaaggacat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 680
Length adjustment: 9
Effective length of query: 270
Effective length of database: 671
Effective search space:   181170
Effective search space used:   181170
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

no map image available.

BAC End Information

Alignment Information