XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAA
AGGAGGTATACCTTGATGTTTCTGTTTGTCATAAGGAAGATTAGTTCTTT
GTAGTGAACTTAGATTTGTAGATTATTATTGCCAGGCATGATACTGAGTT
ACTGATTTCAGTGCTGGTACTCTCGAAATGTTATTTCTTTGTCCTACGAG
GAAGATGAATTCTTAGAAATAGTTAGATTGGTAGATTGTTCTCACAGGGT
CACAGGGATCATTTGTCACCAGGTTCCTGATTTCATCGCTGGTACTTTTG
GAATGAGGTCATTTCTGGGTTGTCTTTCTGTCGAACACTGCAGATGACAT
CCTACTAAGAGCAGGGTGATTGTGTACCGTACAAGGGTATCCATTTGTTT
TCCTCAGATTCTCAGTGTCAGAGGGGTAAGGCGTCTTGAAAGAAGGCTCT
GGAAGTATGGCTCACATACCTGTAAGGGGTGTCTCAGAGTGTTTGAGGGA
TTTTTATTTTTTAGCTTGGAAACTGTTCTTTTTTTTTATTTTTAATCTCA
ATGATATTTAATTTTTCATTCTGTTGACACTTGCTTCAGTGGTTCAAAAG
TAGTAGTAAGTTACAGTGTGGTATCATAGCACTGACCAAAGCCATGGCAC
CAAACCACACTGTATGCTATGGTATTCTGCANGTTAAAATAATAAAAACT
GAAATAATAAAAAAATAGAGAATGGG

CGCGGGGCGCGAGTGGTTAGGGGGGGTCTTAGGGGTTGTTAGTGGNNGNG
GGGNNGGGNNTTNTNNNNNNNNNCCCCAATGTACTAANTGGGGGTTAAGG
CCCCCTGGGGNCGGNGGNCCCCGGNCCTCTTGGGGNCCCCGTTTTCCCAC
CATNTNTAAGGGGNTGGGAACTAACCTAAATTAAGGAAAAGGGGAATCCC
CCGGTCGGCGGAAAATNTCCCCCATTTCCCCCCTTTGGAACCTGGAAGCA
AATTAATCCTCCTTCTGGGNAAAAGGATNNAATTTGGGGAAAATAAGAAA
GGTCCAAGATCAAAAGTATTAATCATTAAGCCTATTTTTCATAATATTCC
TATGGATTCCTACAGAATTTTAATTTATTCCCACTAATCAAAAGAATAGA
AGACTCCTTAGGGGAAGTGCAAGACAATTTAGGACCCCAGGAAAAGGTTA
AACCTGGTTTAAAACTTTCCCTAAAAGTGAAGGGAACCCAAGGGGGATTA
ANGTCCTTNGAATGCATGTCAGGCACGTACTACAAATAATTCACACTCCC
GAAAGAGGAAAAATATCTAAATTTTAAAAATGCGGGAAAGGGCCCCNACT
AGAGGGAAATAATTGCCCGTTTGGGNCCCCCCCCCCAAAAAAAAAAGCCT
TCAGAACCCCNCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CTTACTTCTTNNNA

Query= MSMg01no491_b01.b1 MSMg01no491_b01.b1 CHROMAT_FILE:
MSMg01no491_b01.b1 PHD_FILE: MSMg01no491_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:51 2005
         (646 letters)



>mm_chr3_141627583_141628626
          Length = 1044

 Score = 1100 bits (569), Expect = 0.0
 Identities = 623/641 (97%), Gaps = 4/641 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaaggaggtataccttgatgtttctgtttgtcataaggaagattagttctttg 64
           ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 722 gaattcaaaaggaggcataccttgat-tttctgtttgtcataaggaagattagttcttag 664

                                                                       
Query: 65  tagtgaacttagatttgtagattattattgccaggcatgatactgagttactgatttcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tagtgaacttagatttgtagattattattgccaggcatgatactgagttactgatttcag 604

                                                                       
Query: 125 tgctggtactctcgaaatgttatttctttgtcctacgaggaagatgaattcttagaaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tgctggtactctcgaaatgttatttctttgtcctacgaggaagatgaattcttagaaata 544

                                                                       
Query: 185 gttagattggtagattgttctcacagggtcacagggatcatttgtcaccaggttcctgat 244
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 543 gttagattggtagattgttctcacggggtcacagggatcatttgtcaccaggttcctgat 484

                                                                       
Query: 245 ttcatcgctggtacttttggaatgaggtcatttctgggttgtctttctgtcgaacactgc 304
           ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 483 ttcattgctggtacttttggaatgaggtcatttctgggttgtctttctgtcaaacactgc 424

                                                                       
Query: 305 agatgacatcctactaagagcagggtgattgtgtaccgtacaagggtatccatttgtttt 364
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 423 agatgacatcctactaagagcagggtgattgtgtaccgtacaggggtatccatttgtttt 364

                                                                       
Query: 365 cctcagattctcagtgtcagaggggtaaggcgtcttgaaagaaggctctggaagtatggc 424
           |||||||||||||||||| || | ||||||||||| || |||||||||||||||||||||
Sbjct: 363 cctcagattctcagtgtctgaagcgtaaggcgtctcgagagaaggctctggaagtatggc 304

                                                                       
Query: 425 tcacatacctgtaaggggtgtctcagagtgtttgagggatttttattttttagcttggaa 484
           ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 303 tcacatacctgtaaggggtgtctcagaatgtttgagggatttttattttt-agcttggaa 245

                                                                       
Query: 485 actgttct-ttttttttatttttaatctcaatgatatttaatttttcattctgttgacac 543
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 actgtt-tgttttttttatttttaatctcaatgatatttaatttttcattctgttgacac 186

                                                                       
Query: 544 ttgcttcagtggttcaaaagtagtagtaagttacagtgtggtatcatagcactgaccaaa 603
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 185 ttgcttcagtggttcaaaagtagtagtaagttacagtgtggtatcatagcactggccaaa 126

                                                    
Query: 604 gccatggcaccaaaccacactgtatgctatggtattctgca 644
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 accatggcaccaaaccacactgtatgctatggtattctgca 85


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1044
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1034
Effective search space:   657624
Effective search space used:   657624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)