BAC Information

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BAC

Clone NameMSMg01-491E14
Chromosome3 (Build37)
Map Location 41,898,454 - 41,899,136
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
Downstream geneLOC100039204, LOC100039219
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491E14.T7 (MSMg01no491_e14.b1)MSMg01-491E14.TJ (MSMg01no491_e14.g1)
ACCAG569316AG569317
length7411,344
length of high quality
(start - end)		684 (58 - 741)---
definitionCHROMAT_FILE: MSMg01no491_e14.b1 PHD_FILE: MSMg01no491_e14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:09 2005CHROMAT_FILE: MSMg01no491_e14.g1 PHD_FILE: MSMg01no491_e14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGCTAAACGACTCACTATAGTTCCAGGATCCGCGGAATTCTCTGAGGTT
ATCCACAGATGTATTTACTGATCATATGGTAATTATGTTCTTACATTTTA
GAGAAGTCCACAGTTTTTTGTAACCACTGCCCCCTCTTTCAACAATGTTC
CAAACACTCTACACCCTTGCCAGCACTTTTATTTCTTTACTTTCTTCTTT
CTCTTTTACCCTATGTCTGTCTCCCCATTTCTCTTTCTTTCTTGTTCTTT
CCAGTCATCCTTAACATATCACATTCTGATTTTCATCTCCCTGACAATTC
TCTACACTGTTTCTACATGCTTATTGGGTATTTTTATATCTTCTTTGTAG
AAACACCTATTCAAGCAATTTAGCTTTCTACTAGTTATTTTGTTGTTGAA
TTTAGCAGCTCATTTATAATCCTGATATCATTACCTTATTAGATATATGA
TTTATAAATGTTTTCTCTCAGGTCATAGGTCACCCTTTCACTGCATTTAG
AATTTTCTGTGATGAACAAATATTTTAGATCTTGATATTATTCAATCTAT
TATGGTGTTTGATATTTAGTACTGTATCTCATAAGAATTTCCAATTCCTA
TGTCATGATGCAATTCATCTAGATTTTAAAATTGTATTTCCTATGTATAG
ATCCCAGGTCCATTTTGAATTAACATTTGTGTATGATATAGCTTAAGAGA
ATATTTGGTTGTTTTACATGTTGATATTCAGTTTTTCAAAA

GGGTGTGTTGGTAGGAGGGCTGCGTGAGCTTTTCCACAACACAGCAGGGG
GCGCGGGGGTCGGGCGTCGTTTTCCCCCTAGTGAGCGACGCGAGCGGTGC
GTCGGACCCGTCTCGGTGGGGCTCTGGTGTAGATCTGTGGGTTGGTCGGT
ATTGTGTGGCGCCTCGACTGCTCTGCAGAGTTGCGCGCTGGCGCGTTATT
TAATTAAACTTCTAGATTTACTCTTACGTACAGCGTATCGCATACAGGCC
TCCGCTCCTCCACATCGAGTGTTTGGGTTGTATTGATGAGTTACAGAAAG
TATGAAACAGAAGTGCGGAGTGGCGGTTGAGGGCGCAGAAGGGGGACGAG
AAATGTTCCAAATAACATCATGCTTCCCGCATCTCTCTTATCGTTCGTGT
ACCATTTTACACTAACAGGATAGCATAAAACACCGCAGCACGACACCGGG
AGAGTAATGATATTTCTTTTTTTTGTTCATGCATGGCGGCGGAGAAGAGC
GGGAGTCGATCCACTGTCGGGCCTAAACGACCACGCTATCCAGCGATAAA
GATGAGCCGGTCACTGACGGGGTACTCAACGGGAGGCCACACATCCGATG
CGAGTAGCGCGCTCAGAGATCCGCTTCTCGGGAAGAGGGCGCATACACTC
TTTGGATGGGGAACAGCTACTGTCAATATATTAACCTATTGTTGTATTCA
GAATGATCGTGCTGAAGAGCGTGAGGGAGATCCCAGTAGACGACATGGCT
AGTAGATGAGTACGCGTATGCACGCAAATTCATATGAGAGTGCATATCGG
ATTCGGTGGTGAGTATGTGGTATGACGCGCACGAACGTGAAGGGTCACGC
TGTGTCTCCAGCCGTCGTTGAGTGCTTGACATGAGAGTNGTTCTAGACAT
ACGACATCTTCACGTTCATATCTTCGCGCCTCGCTATGTCGTACNGCATC
ACGTGACTGACANTGACGTCGNCGCTCACACCGATATCACATGTGGCAGT
CGCCTGTACAGTCTGCGCGACTACTCGCTCCGTAATCACTGCCTACGTAC
ACTGATCTGTGCGAAGATGCTACTATCGGACTCGACGCTGATGTGTACCG
TGTGATAACGATCGCGTCCGCGCATATCGTGTATTACTATCCATCGATCT
CGTAGCACGAGGACTGTGGAGCAAGGATGGACGGAGAACAAAGCACGCTC
TTCAGTCATTAAGTCGTACTGTCTATTGAGAGCGGNTGGTGATAAGTACA
GCGATGTACGTATGGTCGAGNTCTGTGTGCGAGAGGACGTGTTCTATGAT
TCGGTGTGTGAGACNCTATCTGTCTGCTCCCCGCGCTTGTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_e14.b1 MSMg01no491_e14.b1 CHROMAT_FILE:
MSMg01no491_e14.b1 PHD_FILE: MSMg01no491_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:09 2005
         (684 letters)



>mm_chr3_41898254_41899337
          Length = 1084

 Score = 1282 bits (663), Expect = 0.0
 Identities = 678/683 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgtatttactgatcatatggtaattatgttcttacattttagagaagtccacagtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatgtatttactgatcatatggtaattatgttcttacattttagagaagtccacagtttt 260

                                                                       
Query: 61  ttgtaaccactgccccctctttcaacaatgttccaaacactctacacccttgccagcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtaaccactgccccctctttcaacaatgttccaaacactctacacccttgccagcact 320

                                                                       
Query: 121 tttatttctttactttcttctttctcttttaccctatgtctgtctccccatttctctttc 180
           |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 tttatttctttactttctcctttctctcttaccctatgtctgtctccccatttctctttc 380

                                                                       
Query: 181 tttcttgttctttccagtcatccttaacatatcacattctgattttcatctccctgacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcttgttctttccagtcatccttaacatatcacattctgattttcatctccctgacaa 440

                                                                       
Query: 241 ttctctacactgtttctacatgcttattgggtatttttatatcttctttgtagaaacacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctctacactgtttctacatgcttattgggtatttttatatcttctttgtagaaacacc 500

                                                                       
Query: 301 tattcaagcaatttagctttctactagttattttgttgttgaatttagcagctcatttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattcaagcaatttagctttctactagttattttgttgttgaatttagcagctcatttat 560

                                                                       
Query: 361 aatcctgatatcattaccttattagatatatgatttataaatgttttctctcaggtcata 420
           ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 aatcctgatattattaccttattagatagatgatttataaatgttttctctcaggtcata 620

                                                                       
Query: 421 ggtcaccctttcactgcatttagaattttctgtgatgaacaaatattttagatcttgata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtcaccctttcactgcatttagaattttctgtgatgaacaaatattttagatcttgata 680

                                                                       
Query: 481 ttattcaatctattatggtgtttgatatttagtactgtatctcataagaatttccaattc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttattcaatctattatggtgtttgatatttagtactgtatctcataagaatttccaattc 740

                                                                       
Query: 541 ctatgtcatgatgcaattcatctagattttaaaattgtatttcctatgtatagatcccag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctatgtcatgatgcaattcatctagattttaaaattgtatttcctatgtatagatcccag 800

                                                                       
Query: 601 gtccattttgaattaacatttgtgtatgatatagcttaagagaatatttggttgttttac 660
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 801 gtccattttgaattaacatttgtgtatgatgtagcttaagagaatatttggttgttttac 860

                                  
Query: 661 atgttgatattcagtttttcaaa 683
           |||||||||||||||||||||||
Sbjct: 861 atgttgatattcagtttttcaaa 883


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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