XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCATC
CCTATTGAAGAAACTTCACTGCAACATACAGACATTGTTATAGATTTTTA
CCATCAAATAAAATGAAGACTTGTTGAGCCCAGTCCCAATGGACACATGT
ACAAAACAACTCATACACCTATGGCTCAGAGCACATTGCAGAAGAAAGGG
GGAAAAGACTGTAAGAGCCAGAATATCAGGAAAGATGCTGTAAGACTGGG
TCATAGCTGTGTCAGATGCTTCATGGGCTAATTCTCACTAAAATGACTGC
CTAAACTTAAATCAAGCTAGTACAACAGTAGATATGCCAAAGCAGAGGGG
GAAAGATTGTGAGGTCTCAGTCCTAAGCCAAGACTACAGGCAACTAAGGA
ATGCTGACAGTGGGAGAAAAATAGTCCTAACCAGGGAAGAGCAGATCAAC
TGGTTCTCCAATACCAAGAAGTCAGCCTTGAAAACATACATATACCATAT
TCAGACTGAGTTTATTATATTTAGAAATATATTTGTATGTACATATATAC
ATTTGACAGTAACTAATAAAACATAGACCATAATTTTGAAAGAGAGCAAA
GAAGGGTATATGGGAGGGTTTGAAGGGATGAAAGGAAAGAAGCAAATAAT
ATAATTTTGGATAGGATCATTTTATATTTCACATTTTAAAAAGCCAAGTT
GAAACGTGTGTTTTAAATGATGTTTCCAAAGTTCTAAATTAACTAGTGA

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTTCCTCATTCATCCATTTACACATTTA
TCAATAGCAAATTTTATATGGGTTTTGATTGGGACATGGAATGCACTGAT
TTTCTAATGTGGACTCAGAATCTAAAATTTCTTGTAACTGTAGAGACTAT
CAGAGATTAAAATAGGTGAGCATTTTAGTTGGTTCATTCTCATTTCTGAT
CTCCTCTCACTCTCTCTCTCTCTCTCCATGTCTCTTTCTCCATTTCTTTT
TTTATTCCCTCTTTTATCTTTATTTTACAGATGTCAAAACATTGAGAAAA
AGTTGCTTATATTAAGTACACTGCTACAAAATTGAGACTGCAAATGAGTA
TTTGTAGATTGGGTCTATATATGATCCATATTTCTAATATTTCCAATTTA
TCATATTTATATAATTGATAAAACTAAGGTTTTATTTTTTTCAGACAAAT
GTTCTCAAGAGCACTCCTGCCTTTATCATTGAGTTTGATATATCCTTACA
TATTGCAACAAAAATACAGGACATTTTTTCTTTCTCTTTTTTCATTTCAG
CATTCTTTCCTAGTAATGTTTTCCCTGCTCCCACCCCCCCCCACAATGGA
ATCTAAATGAAATGTCCAACGGCTTTTCATAAATTTCTGTGCATATGTAG
AAACATATACCGTTCTTTATTTTCA

Query= MSMg01no491_f04.g1 MSMg01no491_f04.g1 CHROMAT_FILE:
MSMg01no491_f04.g1 PHD_FILE: MSMg01no491_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:12 2005
         (611 letters)



>mm_chr3_112956261_112957271
          Length = 1011

 Score =  967 bits (500), Expect = 0.0
 Identities = 578/614 (94%), Gaps = 21/614 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcctcattcatccatttacacatttatcaatagcaaattttatatgggttttgattg 60
           ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 atttcctcattcagccatttacacatttatcaatagcaaaatttatatgggttttgattg 260

                                                                       
Query: 61  ggacatggaatgcactgattttctaatgtggact-cagaatctaaaatttcttgtaactg 119
           | |||||||||||||||||||||||||||||| | |||||||||||||||||||||||| 
Sbjct: 261 gaacatggaatgcactgattttctaatgtgga-tgcagaatctaaaatttcttgtaacta 319

                                                                       
Query: 120 tagagactatcagagattaaaataggtgagcattttagttggttcattctcatttctgat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tagagactatcagagattaaaataggtgagcattttagttggttcattctcatttctgat 379

                                                                       
Query: 180 ctcctctcactctctctctctctctccatgtctctttctccatttctttttttattccct 239
           ||          ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ct----------tctctctctctctccatgtctctttctccatttctttttttattccct 429

                                                                       
Query: 240 cttttatctttattttacagatgtcaaaacattg-agaaaaagttgcttatattaagtac 298
           || ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 430 ctcttatctttattttacagatgtcaaaacattgaaaaaaaagttgcttatattaagtac 489

                                                                       
Query: 299 actgctacaaaattgagactgcaaatgagtatttgtagattgggtctatatatgatccat 358
            |||||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||||
Sbjct: 490 gctgctacacaattgagactgtaaatcagtatttgtagattgggtctatatattatccat 549

                                                                       
Query: 359 atttctaatatttccaatttatcatatttatataattgataaaactaaggttttattttt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 atttctaatatttccaatttatcatatttatataattgataaaactaaggttttattttt 609

                                                                       
Query: 419 ttcagacaaatgttctcaagagcactcctgcctttatcattgagtttgatatatccttac 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttcagacaaatgttctcaagagcactcctgcctttatcattgagtttgatatatccttac 669

                                                                       
Query: 479 atattgcaacaaaaatacaggacattttttctttctcttttttcatttcagcattctttc 538
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 670 atattgcaacaaaaatacaggacattttttctttctcgtttttcatttcagcattctttc 729

                                                                       
Query: 539 ctagtaatgttttccctgctcccacccccccccac-aatggaatctaaatgaaatgtcca 597
            ||||||||||||||||||||||       ||||| |||| |||||||||||||||||||
Sbjct: 730 ttagtaatgttttccctgctccc-------cccaccaatgaaatctaaatgaaatgtcca 782

                         
Query: 598 acggcttttcataa 611
           | ||||||||||||
Sbjct: 783 atggcttttcataa 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)