BAC Information

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BAC

Clone NameMSMg01-491G20
Chromosome3 (Build37)
Map Location 21,070,451 - 21,071,035
singlet/doubletsinglet
Overlap genenone
Upstream geneCpa3, EG664965, LOC100040283, Cpb1, Agtr1b, EG665094
Downstream geneLOC100040325, 7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491G20.T7 (MSMg01no491_g20.b1)MSMg01-491G20.TJ (MSMg01no491_g20.g1)
ACCAG569424AG569425
length749833
length of high quality
(start - end)
639 (37 - 675)178 (69 - 246)
definitionCHROMAT_FILE: MSMg01no491_g20.b1 PHD_FILE: MSMg01no491_g20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:20 2005CHROMAT_FILE: MSMg01no491_g20.g1 PHD_FILE: MSMg01no491_g20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTG
AGTGTTACTACTAGAGCAGCTGTTATGTTATTGCTAAAGCTGGCCAGATA
AACTTTTATGTGCCTAATTTTAAGGCTGGGTCTTTATCAGCTCAGGCTTG
CTTCAGATTTACTATCTAGTAACAGATAACTTTAAAGTCCCCATCCTTAC
TCTTCCTGCCTTTACTTCCTCTGTGCTGGGATAACAGGAATACACCTCTA
CCATGCCTTATTTATGCAGAGTTAAGGATGGAATCCAGGGTCTTTTGTAT
CCATGTATTTCTAGCCTGTCACTGAAGCATAAAACACTGTATATTAATGT
CTGCCACAGCCCACTATTATCTCACCTTTGCCCTTTATCCTTCATCACTT
CTTGTTAGTGGGATGACTTGATGACCACTGAAGAGAATTGCACCTTATAA
TCAAAGCACCAAGGGTTCAGTCTAATGAGAGTGAATCAGAAGTTATAGGC
CTCTTTATTCTGTAATGACTTCTTTGATGCACCCAGTTATGGACTTGCTA
TATGGAAGTAACATGCGGAGTCACTGTTCAGTTGTCTGTAGCTGAAATCA
CTGTTAACTGGGACACATCTGACTGCTCCCTTGTTTTTGACTTGGCTGCC
TAGTAATGCAGAGGTTGGTCCCGAGAAACAGACTTTCTTGAATTCATTCC
AGGTCTGCTTCTCCTTAGCTGTGCATATTAGATAAGTAGGTATACTATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTGAATTTAGTAGCATTTCCACACTGAAGAG
CCCTGCAGCAGAGCTTACACTGTCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTACATACTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC
TCCTTCCTTCCTTTGTTCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCT
TTTTCTGGCTGGCTCGCGCGCTCTCTGTCTTGTGGTCGGGGGTGTGTGGG
GGGGGCCGGGGGGGGTTTTTTTTTTTTTGGGCNCGGGGGGGGGGCGGGGG
GGGGGGGGGGTTTTTTTTCCCTGGCGGTGTGCTGGGGGTGGGGGGGGTGT
GTGTGTGTTGGTTGGGGTTGGCCCCCCGGGCTGTTGTTTTTTGGGGTTGC
GTCTTGTGTTTCTGTTTGTTGGTGGTTTTTCTTGGCGGGTGGTGTGTTCT
GTGTGTTGCGTTGTGTTGTTTTTGTTGGTTGGGTGTTTGGTGGGTTTCTT
CGTGTTTTTTTTTTTTTGTTTTGGGGGGTGGTTGTTGTCTTTCGGGGGTC
TGGTGTGTGGTTCTTGTGTGGTGTGCGTCGTGGTGCGTGTGGTTGTGGTT
GTCTTTTGTTTTGTTGTTTTTCTTGTGGGGTTGTGTTGATTGTGCGCCGC
CCTCCTTCTCTTTGTTTTTTTTAGTTGGNCGTTTTGGTCTGCCGTTGTTA
TCGGGAGTGGTGATTGTGTCTGTGTCCGGTGTTGTGTGTTGGTTTTGTGT
GGAGGCGAACCGTGTGATGTGGTCAGAGGCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_g20.b1 MSMg01no491_g20.b1 CHROMAT_FILE:
MSMg01no491_g20.b1 PHD_FILE: MSMg01no491_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:20 2005
         (639 letters)



>mm_chr3_21069997_21071035
          Length = 1039

 Score =  986 bits (510), Expect = 0.0
 Identities = 567/586 (96%), Gaps = 2/586 (0%)
 Strand = Plus / Minus

                                                                        
Query: 55   tggccagataaacttttatgtgcctaattttaaggctgggtctttatcagctcaggcttg 114
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1039 tggccagataaacttttatgtgcctaattttaaggctggatctttatcagctcaggcttg 980

                                                                        
Query: 115  cttcagatttactatctagtaacagataactttaaagtccccatccttactcttcctgcc 174
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 979  cttcagatttactatctagtaacagataattttaaagtccccatccttactcttcctgcc 920

                                                                        
Query: 175  tttacttcctctgtgctgggataacaggaatacacctctaccatgccttatttatgcaga 234
            |||||||||||||||||||||||||||||||||||| ||||||  || ||||||||||||
Sbjct: 919  tttacttcctctgtgctgggataacaggaatacaccactaccacaccctatttatgcaga 860

                                                                        
Query: 235  gttaaggatggaatccagggtcttttgtatccatgtatttctagcctgtcactgaagcat 294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859  gttaaggatggaatccagggtcttttgtatccatgtatttctagcctgtcactgaagcat 800

                                                                        
Query: 295  aaaacactgtatattaatgtctgccacagcccactattatctcacctttgccctttatcc 354
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799  aaaacactgcatattaatgtctgccacagcccactattatctcacctttgccctttatcc 740

                                                                        
Query: 355  ttcatcacttcttgttagtgggatgacttgatgaccactgaagagaattgcaccttataa 414
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 739  ttcatcacttcttgttagtgggatgacttgatgaccactgaagagaattgtaccttataa 680

                                                                        
Query: 415  tcaaagcaccaagggttcagtctaatgagagtgaatcagaagttataggcctctttattc 474
            ||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 679  tcaaagcaccaagagttcagtctaatgagagtggatgagaagttataggcctctttattc 620

                                                                        
Query: 475  tgtaatgacttctttgatgcacccagttatggacttgctatatggaagtaacatgcggag 534
            |||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 619  tgtaatgacttccttgatgcatccagttatggacttgctatacggaagtaacatgcggag 560

                                                                        
Query: 535  tcactgttcagttgtctgtagctgaa-atcactgttaactgggacacatctgactgctcc 593
            |||||||||||||||||||||||||| | ||||||||||||||| | |||||||||||||
Sbjct: 559  tcactgttcagttgtctgtagctgaaga-cactgttaactgggagagatctgactgctcc 501

                                                          
Query: 594  cttgtttttgacttggctgcctagtaatgcagaggttggtcccgag 639
            ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 500  cttgtttttgacttggctgcctagtaatgcagaggttggccccgag 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)