BAC Information

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BAC

Clone NameMSMg01-491K04
Chromosome3 (Build37)
Map Location 105,773,160 - 105,773,412
singlet/doubletsinglet
Overlap genenone
Upstream geneCttnbp2nl, 4930564D02Rik, 1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77
Downstream geneOvgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491K04.T7 (MSMg01no491_k04.b1)MSMg01-491K04.TJ (MSMg01no491_k04.g1)
ACCAG569583AG569584
length722763
length of high quality
(start - end)
249 (69 - 317)246 (65 - 310)
definitionCHROMAT_FILE: MSMg01no491_k04.b1 PHD_FILE: MSMg01no491_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:36 2005CHROMAT_FILE: MSMg01no491_k04.g1 PHD_FILE: MSMg01no491_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAAGATAGCGCGGAATCCAG
AGCAGGGTACTTAAAATGGATGTCCTGCCTGCTGTACCAGCTGGGAATAA
ACAAAGAATGGTCTTTATATGTCAGCTTTACTAAGCTCTGAACATCTTCT
TTAGCTTCCTATAAAACCATCTTCCTTGACTCCAGCACCGGGGTGCCTTG
CCCGCGGAGTCTCCGGACACCCGCAAGGACCCACACAGAATCCCCATGGG
ATCCTAAGACCTCTGGTGAGTGGAACACAGCGCCTGCTCCTATCCAATCG
CACCTAACCTGAGACTTTTTTATTTAAGGAAGCAGATGACCCGGCCTGAA
TAGGGGCACAAGTCACTTCCGGTCCACTCCAACACCAGGGTGCCTTGCCC
ACGGAGTCTCCGGACACCCGCAAGGACCTACACAGGATCCCCCACGGGAT
CCTAAAACCTCTGGTGAGTGGATCACAACTTCTACCATGAGGCAGGTTCT
AACACCAGATATCTGGACAACTTCCCTGCAAGAATAGAGTTAGCCTGCAG
AGAATACTCTGACCACTGAAACTATGGAGAGATCTAGTCTCCCAGGTTTG
CAGATAGAGGTTAATAGATGCTCCTGAGGATTAGTTCCTACCGTAGACAT
CTATTTTTTTTTTTCTTCTTAGAATACCATATGTGAATAGGTAATATTTG
TAACCTGGCTATAGAAATCTGG
GGCCTGGCGGGCGCCTGGCCGATCANTATTGGGGAACNANAGAAGGATCC
TACGAAAAAAAGGGGGGAGAGGAGGGATAACTGGTAAGTTAGAATGACCA
CAGTGCTTGGTCTTACGGTCTTTGATGTGGTCCTCCACTTACTGTGGGTT
ACTTTGATATTCTGTGTGTAAGGAATGAATTGTCAAATTCAATGGCTCAG
TAAACAGTTCTGGTGGGAGCCAGCCACTGATTGTTTGAAAACTCTCTCCC
TTGTCCCTGTTGTGTTAGACAAGCATTTCATTTTGGAGGCATTGTGCTAA
AAGCATTAACTTTTTTTTTCTAATGAGAAAGTTCCACTCTAGTAGTAATT
TCTCTAGAGTGGATTCTCAGCAATGCAATGAAGACTATACTTAATGTATT
TTACATCCACATGCTAAGCCTCAGTTCTACACATACAACTTACCAGAAAT
CATTTGACACTGGCCATGCTTAATAAGCTGGGTGTGTTTGGTTCCAAGGA
TACGTATTTTCTTACTCTAAAGGCATATGACATAACTTTTGAACCTAAGA
GGTAGTCCTGGAACCTTCATTTAAGAGCTTACATCAGCCTGGGTATGATG
GCTTGTCTCAAAAAAAAATAAATGATGTGAATAAATTGACTTTAAGATTC
GGTGTTTAATAAATTTTTAAGGAGCAGTGATGTGTTTCTCAAAACTTGTC
ATTGAGTAATATCATGATCTGTTGAAAAATTTGTTTGTGTAGATAAATAC
TTTTTTTATGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_k04.g1 MSMg01no491_k04.g1 CHROMAT_FILE:
MSMg01no491_k04.g1 PHD_FILE: MSMg01no491_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:36 2005
         (246 letters)



>mm_chr3_105772967_105773612
          Length = 646

 Score =  424 bits (219), Expect = e-123
 Identities = 241/253 (95%), Gaps = 8/253 (3%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggagaggagggataactggtaagttagaatgaccacagtgcttggtcttacggtctttga 61
           |||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 194 ggagaggaggaataactggtaagttagaatgaccacagtgcatggtcttacagtctttga 253

                                                                       
Query: 62  tgtggtcctccacttactgtgggttactttgatattctg--------tgtgtaaggaatg 113
           |||||||||||||||||||||||||||||||||||||||        |||||||||||||
Sbjct: 254 tgtggtcctccacttactgtgggttactttgatattctgccattctgtgtgtaaggaatg 313

                                                                       
Query: 114 aattgtcaaattcaatggctcagtaaacagttctggtgggagccagccactgattgtttg 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aattgtcaaattcaatggctcagtaaacagttctggtgggagccagccactgattgtttg 373

                                                                       
Query: 174 aaaactctctcccttgtccctgttgtgttagacaagcatttcattttggaggcattgtgc 233
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aaaactcactcccttgtccctgttgtgttagacaagcatttcattttggaggcattgtgc 433

                        
Query: 234 taaaagcattaac 246
           |||||||||||||
Sbjct: 434 taaaagcattaac 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)