Query= MSMg01no492_b16.b1 MSMg01no492_b16.b1 CHROMAT_FILE:
MSMg01no492_b16.b1 PHD_FILE: MSMg01no492_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:14 2005
(672 letters)
>mm_chr3_6525866_6526936
Length = 1071
Score = 1237 bits (640), Expect = 0.0
Identities = 661/668 (98%), Gaps = 1/668 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtatctttatgctatgatgaaactaaaagggggcttgggttgaaatgttgtat 64
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gaattaagtatctctatgctatgatgaaactaaaagggggcttgggttgaaatgttgtat 744
Query: 65 ctaagcattaaaacaatcaggaaaggacagtgacagcagctcagatttgcaatgtttttt 124
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ccaagcattaaaacaatcaggaaaggacagtgacagcagctcagatttgcaatgtttttt 684
Query: 125 ttttagtagctgcctactaacaattaatttggtctgtaatctaaaacatattataattaa 184
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 683 ttttagtagctgcctactaacaattaatttggtctgtaatctaaaacacattataattaa 624
Query: 185 tttctcaatatttaccaagtacaagtcattactttaatgtgctatgtcattaataaaatc 244
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 623 tttctcaatatttaccaagtacaagtcattactttaatatgctatgtcattaataaaatc 564
Query: 245 ctgttattatttttttctcataaagaatatctcagactgatctacatttttccatgctgc 304
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 563 ctgttattatttttttctcataaagaatagc-cagactgatctacatttttccatgctgc 505
Query: 305 caaggcagaatggactcaagggatattatcttattcagaaagaacctttcaaggttgaat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caaggcagaatggactcaagggatattatcttattcagaaagaacctttcaaggttgaat 445
Query: 365 aaaagaaatggtacagggtccctgggagcgggaggtgatcatcattttcaccttcaactc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaaagaaatggtacagggtccctgggagcgggaggtgatcatcattttcaccttcaactc 385
Query: 425 ctgtttgatgtggcagagtcaatttttaatcagcagccatcagactgggcttcatttcgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgtttgatgtggcagagtcaatttttaatcagcagccatcagactgggcttcatttcgc 325
Query: 485 cttacaaagtcctattaccctgcgctctctggaaggaggtgataaggacacagctttgcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttacaaagtcctattaccctgcgctctctggaaggaggtgataaggacacagctttgcc 265
Query: 545 ttttcacttcatagagccctgcatatgatgagtctctttggagagacttgatgaaaaaac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttttcacttcatagagccctgcatatgatgagtctctttggagagacttgatgaaaaaac 205
Query: 605 taaaataaataataaaataaaataaaaagaatatatggggataaaggtcacctctctgtc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 taaaataaataataaaataaaataaaaagaatatatggggataaaggtcacctctctgtc 145
Query: 665 acaattaa 672
||||||||
Sbjct: 144 acaattaa 137
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1071
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1061
Effective search space: 702382
Effective search space used: 702382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no492_b16.g1 MSMg01no492_b16.g1 CHROMAT_FILE:
MSMg01no492_b16.g1 PHD_FILE: MSMg01no492_b16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:14 2005
(620 letters)
>mm_chr3_6381937_6382956
Length = 1020
Score = 1145 bits (592), Expect = 0.0
Identities = 613/620 (98%)
Strand = Plus / Plus
Query: 1 taaggaaattgttataatttatactcttatgcttttccaaataaaaattaaaggttatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaggaaattgttataatttatactcttatgcttttccaaataaaaattaaaggttatat 260
Query: 61 ctgtgtgaatgatgtaggaaattctaatgttctatgatgaaggtaaatattttgaaacag 120
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcatgaatgatgtaggaaattctaatgttctatgatgaaggtaaatattttgaaacag 320
Query: 121 cagaagcgattagatactgagcagggttccttggtgctttaagctgatttttgtcccatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaagcgattagatactgagcagggttccttggtgctttaagctgatttttgtcccatt 380
Query: 181 tcaatagtagctgaataaagaaaatggcttacagatttagctgtgtatatactttgaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaatagtagctgaataaagaaaatggcttacagatttagctgtgtatatactttgaaag 440
Query: 241 taacttctgaaaaatgatgttcataatctgaattgcaatgaaaccaattatcttttctgt 300
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taacaactgaaaaatgatgttcataatctgaattgcaatgaaaccaattatcttttctgt 500
Query: 301 ggctattcacatgggaattctcctaaaggtttagtatttcttaaaagaaattaaaaacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggctattcacatgggaattctcctaaaggtttagtatttcttaaaagaaattaaaaacag 560
Query: 361 ctgtaaaaataccataaaacaaaaatagcagctgcaaaagagattaacattcctaaattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtaaaaataccataaaacaaaaatagcagctgcaaaagagattaacattcctaaattt 620
Query: 421 catttgaacctgatatgttatttttccaaaagcaatgtaaattctttctgatttttaaac 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 catttgaacctgatatgttatttttccaaaagcaatgtatattctttctgatttttaaac 680
Query: 481 gtatatgaaattttacctttaaagaagcaggactactgaatataaaatttttaacccagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtatatgaaattttacctttaaagaagcaggactactgaatataaaatttttaacccagg 740
Query: 541 tttgatagctgctagaattgtacaaacttctctcctgttaatgtgtttctattattgtca 600
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 741 tttgatagctgctggaattgtacaaacttctctcctgctaatgtgtttctattattgtca 800
Query: 601 ccccctataaagtgatcttc 620
||||||||||||||||||||
Sbjct: 801 ccccctataaagtgatcttc 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
