BAC Information

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BAC

Clone NameMSMg01-492C05
Chromosome3 (Build37)
Map Location 129,641,947 - 129,805,710
singlet/doubletdoublet
Overlap geneCcdc109b, Sec24b, EG668844
Upstream geneEG668831, Pitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6
Downstream geneEG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811, LOC545568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492C05.T7 (MSMg01no492_c05.b1)MSMg01-492C05.TJ (MSMg01no492_c05.g1)
ACCAG569965AG569966
length706742
length of high quality
(start - end)
525 (68 - 592)243 (75 - 317)
definitionCHROMAT_FILE: MSMg01no492_c05.b1 PHD_FILE: MSMg01no492_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:17 2005CHROMAT_FILE: MSMg01no492_c05.g1 PHD_FILE: MSMg01no492_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,805,295 - 129,805,710)(129,641,947 - 129,642,185)
sequence
NATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAGGATTGCTTTGATTCCTCAGCAACATGGTAAGCAAGATATTT
TTTAAATGACTTGCATAAACTGAAAGTTAATGGCTTTCAAAGTAGAGTTC
TGTGCTTTGACAAGCTATGGAGGACGTATGAATGGCCTTGGGTTAATCAA
TGGCAGTCCATCCTAGTGACTGGGAGGGACAAGGCATTTGGGGACATTTG
CCAGAGAAACAGGAATCAGCTGTCTTCAAATAGTTTTTTATTTTAAAATA
TTATTTATCCCTTTATATATGTATAACTATTCTTGCCTGCATGCATGTCT
GTGCATTGCATCTGCACAGTGCCGAGGGAGGCCAAGAGAGGCCATCGGAT
ATCCTGGATGCATCTAGTGTGACAGGTAGTTGTGAACTGCCATGTGGATC
CTGCAAATCAAACCTGGGTCCTCTGCAAAAGCAACAAGTGCTCTTAGTGG
CTGAGCCATCCCTCCAGTCACTTTCTCTTTACTGCATCCTCTGGAGAGTT
TCATGATTCAGTTCTGGATGTAGATACACAGATGCTATGGGTATGTACTA
AAACCCAAAACAAGCAAGCAAGCGAGCGAGCTTAAACCCTCATAGCATCA
TCCAGTGGCACATGGGTGGTGGCCTCTGAGACCCTTTTGGCTTTTGCGCT
TTCGGA
CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCTCCCGAAATTCTCCTTTGTGATACTGTTTCTAGTAGT
TGGGTTGGGACATGAGTAACTGCATCGTGAATGTGCACTAAGTAAAAGTC
CCAAGCATAATAAGGCAGCAGGAAGGAGCGATTGAGGAAGGAAAGCTTCC
CATGGGATCGAGAGGAGAACACGGCCCAGTGCTTGGTGACTTAAGCCAAT
CACTGTCAACGGTGATCTGGAAGAAGGGAGTTGAGACTCAGAGGTCTGAC
CAGATGGTGCTGATTTTTTTTTTCGTCAATGCTTTGATGCCCAGTGTCTG
AGATGCTGGGAGGTATAGAGCCACGTGGGATTGTACAGTCACAGCTCTAA
GTAAGTCCTGTGAACCAGCACCTAAATGGTTCATGTTTAGTTCTGCACAG
ACGTACGTAATGATAGCTCTAATTCTTTCTGATACTTCCCTATCGTCGGG
CATGGTGGCGCATTCCTTTCGTCTTTACAGTTTCCTATGTATATGCATGC
CTTATCTTCTGATTCTCAGGCCTTTCTTATGTCTTCAGCTTTGATTTCCT
TTGTTCATCCTTTGCTTATTCTCATTATACCCCCGTCTCTTACCTACTCC
TTATTCATTTCTTCACCCCCCTCACCCTTTCCTCTTTTTCTTCCCCCTTA
TCCTTCTTTCTTCTTTCTACTCTTCACCTCTGCATTCTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_c05.b1 MSMg01no492_c05.b1 CHROMAT_FILE:
MSMg01no492_c05.b1 PHD_FILE: MSMg01no492_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:17 2005
         (525 letters)



>mm_chr3_129805295_129806219
          Length = 925

 Score =  781 bits (404), Expect = 0.0
 Identities = 413/416 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgattcctcagcaacatggtaagcaagatattttttaaatgacttgcataaactgaaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tgattcctcagcaacatggtaagcaagatattttttaaatgacttgcataaactgaaagt 357

                                                                       
Query: 61  taatggctttcaaagtagagttctgtgctttgacaagctatggaggacgtatgaatggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 taatggctttcaaagtagagttctgtgctttgacaagctatggaggacgtatgaatggcc 297

                                                                       
Query: 121 ttgggttaatcaatggcagtccatcctagtgactgggagggacaaggcatttggggacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ttgggttaatcaatggcagtccatcctagtgactgggagggacaaggcatttggggacat 237

                                                                       
Query: 181 ttgccagagaaacaggaatcagctgtcttcaaatagttttttattttaaaatattattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ttgccagagaaacaggaatcagctgtcttcaaatagttttttattttaaaatattattta 177

                                                                       
Query: 241 tccctttatatatgtataactattcttgcctgcatgcatgtctgtgcattgcatctgcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 tccctttatatatgtataactattcttgcctgcatgcatgtctgtgcattgcatctgcac 117

                                                                       
Query: 301 agtgccgagggaggccaagagaggccatcggatatcctggatgcatctagtgtgacaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 agtgccgagggaggccaagagaggccatcggatatcctggatgcatctagtgtgacaggt 57

                                                                   
Query: 361 agttgtgaactgccatgtggatcctgcaaatcaaacctgggtcctctgcaaaagca 416
           ||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||
Sbjct: 56  agttgtgaactgccatgtggatcctgggaatcaaacctgggtcctctacaaaagca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no492_c05.g1 MSMg01no492_c05.g1 CHROMAT_FILE:
MSMg01no492_c05.g1 PHD_FILE: MSMg01no492_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:17 2005
         (243 letters)



>mm_chr3_129641747_129642389
          Length = 643

 Score =  424 bits (219), Expect = e-123
 Identities = 234/239 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctttgtgatactgtttctagtagttgggttgggacatgagtaactgcatcgtgaatgt 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctttgtgatactgtttctagcagttgggttgggacatgagtaactgcatcgtgaatgt 260

                                                                       
Query: 61  gcactaagtaaaagtcccaagcataataaggcagcaggaaggagcgattgaggaaggaaa 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 261 gcactaagtaaaagtcccaagcataatcaggcagcaggaaggagcgattgacgaaggaaa 320

                                                                       
Query: 121 gcttcccatgggatcgagaggagaacacggcccagtgcttggtgacttaagccaatcact 180
           ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttcccctgggatccagaggagaacacggcccagtgcttggtgacttaagccaatcact 380

                                                                      
Query: 181 gtcaacggtgatctggaagaagggagttgagactcagaggtctgaccagatggtgctga 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcaacggtgatctggaagaagggagttgagactcagaggtctgaccagatggtgctga 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)