BAC Information

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BAC

Clone NameMSMg01-492L02
Chromosome3 (Build37)
Map Location 67,280,745 - 67,281,239
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625115, Shox2, Rsrc1, Mlf1, Gfm1, Lxn
Downstream geneRarres1, Mfsd1, LOC667207, Gm412, EG208426, EG545531, LOC631379
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492L02.T7 (MSMg01no492_l02.b1)MSMg01-492L02.TJ (MSMg01no492_l02.g1)
ACCAG570389AG570390
length760722
length of high quality
(start - end)
160 (117 - 276)497 (88 - 584)
definitionCHROMAT_FILE: MSMg01no492_l02.b1 PHD_FILE: MSMg01no492_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:59 2005CHROMAT_FILE: MSMg01no492_l02.g1 PHD_FILE: MSMg01no492_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGAATGGCGCGG
AATTCTTGGTTCATTCTTGAGACCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTATGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTC
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATGTTACAGGACAAGCCATTGCGGTTC
TGGTCACGAATTTTTCTTGTGTGCCCGTAGTCTTCAAGGCTTTTCCGCGC
TTTCTCCTCTTTAAGTTTCGGTGTCTCTGGTTTTATGTGAACGGTCTTTG
ATCCACTTATATGTGACGCTTACATAATGAGATAGGTATGGATCTGTTCG
CATTCTTCCGCCTGATAGTAACGCGGGTGTGCCCGCACCATTTAGTGAAG
ACGCTGTCTTCCCGCTTCTGTACGGCTTTACGTGCCTTGTGCAATCATCC
GGTGATCCTAACGTGTGTGGTTTCATTTCTGGCTTTTCCGATTTCTATTT
TTGTTTGTCGTACTTGTTTCGTTTCTCCTCTCTTTTGTTTTTCCCGTTGT
TTACCCTCTCTTTGGCTTTTGAGGTAAAAGCACTATCCGTCCTAGTCACG
GCCGGATTTCTTACTTTAGTGTTCCCCTATTTTCCTCGTATAAATTAACA
CTCTCCGCCG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATGCATAGATTAGGGAGCATGGTGGCTGA
GTCTTGTTCAAAGTTAGGGAAGGTCACAAAACTGACCAGAAATTTCTAAA
CTGAGAAAAATGTATGGTGTCTTGAAGGACTGACATTCAACCCCAAGTAT
AGACATTTAAAACTGACCTTCAAATGACCTGTCTTAGCGTTCTGTTGCTG
TGAACAGCCATGGCAGCTCCTATACGAGAAGGCATTTAATTGGGGCTGGC
TTATCGTTTCAGATTTTTGATTCGTTATCATGATGGGAGCATGGCAGCAC
ATAGGCACACAAGATACTAGAAAAGTAACAGAGTTCTGCATCTGCATCTG
CAGACAGCAGGAAGAGAGAGACTCTGGGCCCGGCTTTGGCCTTTGAAACC
TTAAAGCCCCACCCCCAGGGACATACTTCCTCTAGCTAGGCCACACTTCC
TAATCCTTTCAATTACTTACACTCCCTGGTGACCAGGCCTTCAAATCTGT
GAGCCTATAGGGGCTGTTCTCATTCAAACCTCCGTGTTTACTGTCTAAAA
ATGTATCATTCATGTATGAAAAGTTGAAACAGTATAACAAAAATCCTGGT
GCTACTTTTGAATATCTTGAAATTCCAAAGGTTGTGGAGCCGGTCAGTGC
ATGTGAGGCTAACTGCCTCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_l02.g1 MSMg01no492_l02.g1 CHROMAT_FILE:
MSMg01no492_l02.g1 PHD_FILE: MSMg01no492_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:59 2005
         (497 letters)



>mm_chr3_67280544_67281439
          Length = 896

 Score =  890 bits (460), Expect = 0.0
 Identities = 487/496 (98%), Gaps = 1/496 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   catggtggctgagtcttgttcaaagttagggaaggtcacaaaactgaccagaaatttcta 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 catggtggctgagtcttgttcaaagttagggaaggtcacaaaactgaccagaaatttcta 261

                                                                       
Query: 62  aactgagaaaaatgtatggtgtcttgaaggactgacattcaaccccaagtatagacattt 121
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aactgagaaaaaagtgtggtgtcttgaaggactgacattcaaccccaagtatagacattt 321

                                                                       
Query: 122 aaaactgaccttcaaatgacctgtcttagcgttctgttgctgtgaacagccatggcagct 181
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaa-ctgaccttcaaatgacctgtcttagcgttctgttgctgtgaacagccatggcagct 380

                                                                       
Query: 182 cctatacgagaaggcatttaattggggctggcttatcgtttcagatttttgattcgttat 241
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 381 cctatacgagaaggcatttaattggggctggcttatcgtttcagaggtttgattcgttat 440

                                                                       
Query: 242 catgatgggagcatggcagcacataggcacacaagatactagaaaagtaacagagttctg 301
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 catgatgggagcatggcagcacataggcacacaagatactagagaagtaacagagttctg 500

                                                                       
Query: 302 catctgcatctgcagacagcaggaagagagagactctgggcccggctttggcctttgaaa 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catctgcatctgcagacagcaggaagagagagactctgggcccggctttggcctttgaaa 560

                                                                       
Query: 362 ccttaaagccccacccccagggacatacttcctctagctaggccacacttcctaatcctt 421
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttaaagcccctcccccagggacatacttcctctagctaggccacacttcctaatcctt 620

                                                                       
Query: 422 tcaattacttacactccctggtgaccaggccttcaaatctgtgagcctataggggctgtt 481
           |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 tcaaatacttacactccctggtgaccaggcgttcaaatctgtgagcctataggggctgtt 680

                           
Query: 482 ctcattcaaacctccg 497
           ||||||||||||||||
Sbjct: 681 ctcattcaaacctccg 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 896
Length adjustment: 10
Effective length of query: 487
Effective length of database: 886
Effective search space:   431482
Effective search space used:   431482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)