NNCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGC
GGAATTCTGCAAAATTTCTTCAAGTAGCCTGAGGGGTACATGTTCTCCAG
CTAGAAACAACATGGTAATGTTTTGCAGTAAGAACCAAGGCCTGAGAAAT
TTCTGGAACTCATTTTACTGTTGGGACTGCAAGCATCATGACTTGTGTAT
TAATTTTTGTTTTTAAGCTTTGGCTCTGTGAAATTTTAAGCAGCAAAGAT
TTTACATAATATATCCTTCTAATTACGTTCCTTTTATTGTCATTCAAAAT
ACACCTTTAGTTTGGTGACTTAAATATAAGAATTTACATTATTTAATCTA
ATTAATAATTTAGATAAGATTGGAGTATATTTAAGAGTACAATTTTTGTT
TTCTGTGATTTCTCTAAACATCTTAGTGTAATTAAGGTCATGGAAAATAC
TGAGGAGAGTCAAATACTGAAAAGAGATGATTCTCCAGACATGATGATCA
GTTTGAGCAGATCTATTCCAGATGCTTGTGAATGTGTAGAATTATTTTAA
AGCTTGTATAAGAAAAAAAAAGAAAGAAAGAAAGAAAAAAACAAAACAAA
ACTGGAAATAAGAGAAGAAATGAAGCCTAAGGGGGAAAAAAAAGACAAAA
TTAACTGAAGATAGTGGCTAAGTATAATGAAGAGAAATGTATTACTCTTT
TTTTAAGAGGTTGAAAATGCTATCTA

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAGATTTCTCAGGCTCATGTATTG
GTAGGATTAACACAGTAAAAATGGCAGTCTACTGATTCAACACAATCCCC
ATCAAAACTTCAAAACATTTTTTACAGAGATGGAAAACACAATTCTTAAT
TTCATTTGAAAAAAAAAAAACCTTATAACAGAAAACAATCCTTAACAATA
ACAAGTCTTTTAGGACAATCACTGTCCCTGACCTCAAGTTGTACTGTAGA
GCAATACTGATAAAAACTGTGTGGTATTAGTACAGAGACAGACATGTCCA
TAGAATAGAATTGAAGACCCAGAAATAAACCCACACACTTATGGACAATT
GATCTTTGATAATGAAACCAAAAAAAATACAGTGGGGAAAAATTATTTTC
AATAAATGGTCCTAGTCTGTCCATTTGTATGTAGAAAAATGAAAATAGAT
CCATAGTTTCCATCTGGGACAAAGCTCACGTCCAAGTGGATCGAGGATCT
CTACATAAAATTGGAAACAATGAATCTGATAGAAGAGAAATTTGAAAAGA
GAATTGAACATATTGGCACAGGGAAATTTTCTAAAGAGAACTCAGACTCT
AAGAACAACAATTGAAAAATGGGACCTCATCAAGCTGAAAAGCTTTGGTA
ACACAAAAGACATAGTCAATAGGACAAATGGACNACCTACAGN

Query= MSMg01no493_a21.b1 MSMg01no493_a21.b1 CHROMAT_FILE:
MSMg01no493_a21.b1 PHD_FILE: MSMg01no493_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:27 2005
         (636 letters)



>mm_chr3_12482268_12483303
          Length = 1036

 Score = 1116 bits (577), Expect = 0.0
 Identities = 619/635 (97%), Gaps = 6/635 (0%)
 Strand = Plus / Minus

                                                                        
Query: 5    ggaattctgcaaaatttcttcaagtagcctgaggggtacatgttctccagctagaaacaa 64
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1025 ggaattctgcaaaatttcttcacgtagcctgaggggtacatgttctccagctagaaacaa 966

                                                                        
Query: 65   catggtaatgttttgcagtaagaaccaaggcctgagaaatttctggaactcattttactg 124
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 965  catggtaatgttttgcagtaagaacaaaggcctgagaaatttctggaactcattttactg 906

                                                                        
Query: 125  ttgggactgcaagcatcatgacttgtgtattaatttttgtttttaagctttggctctgtg 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905  ttgggactgcaagcatcatgacttgtgtattaatttttgtttttaagctttggctctgtg 846

                                                                        
Query: 185  aaattttaagcagcaaagattttacataatatatccttctaattacgttccttttattgt 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 845  aaattttaagcagcaaagattttacataatatatccttctaattacgttccttttattga 786

                                                                        
Query: 245  cattcaaaatacacctttagtttggtgacttaaatataagaatttacattatttaatcta 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785  cattcaaaatacacctttagtttggtgacttaaatataagaatttacattatttaatcta 726

                                                                        
Query: 305  attaataatttagataagattggagtatatttaagagtacaatttttgttttctgtgatt 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725  attaataatttagataagattggagtatatttaagagtacaatttttgttttctgtgatt 666

                                                                        
Query: 365  tctctaaacatcttagtgtaattaaggtcatggaaaatactgaggagagtcaaatactga 424
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665  tctctaagcatcttagtgtaattaaggtcatggaaaatactgaggagagtcaaatactga 606

                                                                        
Query: 425  aaagagatgattctccagacatgatgatcagtttgagcagatctattccagatgcttgtg 484
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 605  aaagagatgattctccagacatgatgatcagtttgagcagatctatttcagatgcttgtg 546

                                                                        
Query: 485  aatgtgtagaattattttaaagcttgtataagaaaaaaaaagaaagaaagaaagaaaaaa 544
            |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 545  aatgtgtagaattatttttaagcttgtataagaaaaaaaaa-aaagaaagaaagaaagaa 487

                                                                        
Query: 545  acaaaacaaaactggaaataagagaagaaatgaagcctaaggggga---aaaaaaagaca 601
            |  || |||||||||||||||||||||||||||||||||||||||    |||||||||||
Sbjct: 486  a--aatcaaaactggaaataagagaagaaatgaagcctaagggggggggaaaaaaagaca 429

                                               
Query: 602  aaattaactgaagatagtggctaagtataatgaag 636
            |||||||||||||||| ||||||||||||||||||
Sbjct: 428  aaattaactgaagatattggctaagtataatgaag 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)