TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTGTCTTTCGGCCTTTGGAAAGTCCAGCGACCCCACTGAGATCAC
CACAGGTCCATTAGCACCGCTAGGGTTTTAACTAGATGGGCTGTGTGGGT
AAGACAGCTTCATTTGCAATCAAGAGGGTCAGGGTTAACCAAAGAATCTA
CATAAGAAGCAAGCCATGCCTGTGTCCAACACCCCTCCCCTACACTGTGC
TTAAAGACAAACCACTCCTTGGGATCTCAAGGGCTGGATGGACTGCCAGC
CTGGGAAACACAGCAGCCTAGGGGCCAGTGAGAGAGTCTATCTCAACCCA
GTAAGTTGAAGAGTGATAGGAAAATATGTTACTTTTGCTTTGGCCTCTTT
ATACATGCACACTCATGTGCAAGCACCACACACGCGTGCAAACACACAAA
AATAATAGCAATAAACACTAACAAAATCAAATGCTGGCAAAGCTGAGAGG
AAAATTCAGGCTCATGCATTGTCACTAGAAATATAAAATGAAACCTTGGA
AAATAACTCGGGGATCTCCTTACAAATTAAATATACAATCATCTGTAGCA
ACTTCTTAAGTAATCTAACAAAATATCCAGCAATTGGCCAGTGGTTACAT
AAACAGGCAGGGCTCAGCAGAGTGTGACTTCAAATGGGAAGAAAATGGTC
GCTAGGGCTAACACACACACACACACACACACACACACACAC

TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGACTGAATATTCTGTGGGTCAAGTGAG
AAGAGATGCTAAGTGTGTCTCCTTCACTGATAGGACAGTGCCAACAAGCT
TGAGGAAAATGTCCATTACTTTGGCCGGACTGTTGAGACCCTGTTACTCC
GTTTTGGAAAGGTAAGTGGGTCTGGCCAGGTTTGGGGCACTACTTCCGTT
TACCCACACTCTCCCAGGATCAGCAGCCATGGGACTACTTTGGGCCCATT
GCTCACCTATGAGACCATTTTTATAACAGAAATTTTGACCTCCATGAGGC
TGGAACTGCTAGCCAGTACAGCCCATGGAGGGGCCCTACTGGGTGGGTTG
TTCATAGCATTCTCAGCACCCTCCAACCACACAGTGGCTTTTGGAGTACC
TGGCTGGGCCACCTACCTGGGTCGAGTGCAAGGAGTTAATCTCCGTGCAG
AATCTTGCTGGAGTGACTCTGAGCACAGTAAGCATCAGCCTCTGGTATCA
GACAGGTTTCTGAGACCTGTTTAAATATACATTATGACATGTGCCTGAGT
ATAAAGAANGGAGAAGTGTCATTGTCACCACTCTGAACCTCTGTCGTCAG
AACATTGTAGAGGAACAGCTGGTGTTAAAGCGGGTAGCCAACATCCTCAT
CAACTTGTATGGCATGACTGCTGTGCTGTCAAGAGCCACN

Query= MSMg01no493_e14.b1 MSMg01no493_e14.b1 CHROMAT_FILE:
MSMg01no493_e14.b1 PHD_FILE: MSMg01no493_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:45 2005
         (617 letters)



>mm_chr3_36122163_36123179
          Length = 1017

 Score =  764 bits (395), Expect = 0.0
 Identities = 419/427 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgtctttcggcctttggaaagtccagcgaccccactgagatcaccacaggtc 64
           ||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaattcattgtcattgggcctttggaaagtccagcgaccccactgagatcaccacaggtc 368

                                                                       
Query: 65  cattagcaccgctagggttttaactagatgggctgtgtgggtaagacagcttcatttgca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cattagcaccgctagggttttaactagatgggctgtgtgggtaagacagcttcatttgca 308

                                                                       
Query: 125 atcaagagggtcagggttaaccaaagaatctacataagaagcaagccatgcctgtgtcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 307 atcaagagggtcagggttaaccaaagaatctacataagaagcaagccatgcctctgtcca 248

                                                                       
Query: 185 acacccctcccctacactgtgcttaaagacaaaccactccttgggatctcaagggctgga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 acacccctcccctacactgtgcttaaagacaaaccactccttgggatctcaagggctgga 188

                                                                       
Query: 245 tggactgccagcctgggaaacacagcagcctaggggccagtgagagagtctatctcaacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tggactgccagcctgggaaacacagcagcctaggggccagtgagagagtctatctcaacc 128

                                                                       
Query: 305 cagtaagttgaagagtgataggaaaatatgttacttttgctttggcctctttatacatgc 364
           |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 127 cagtaagttgaaaagtgataggaaaatacgttacttttgctttggcctctttatacatgc 68

                                                                       
Query: 365 acactcatgtgcaagcaccacacacgcgtgcaaacacacaaaaataatagcaataaacac 424
           |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 67  acactcatgtgcaagcaccacacacgcgtgcaaacacacacaaataataacaataaacac 8

                  
Query: 425 taacaaa 431
           |||||||
Sbjct: 7   taacaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no493_e14.g1 MSMg01no493_e14.g1 CHROMAT_FILE:
MSMg01no493_e14.g1 PHD_FILE: MSMg01no493_e14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:45 2005
         (405 letters)



>mm_chr3_35987728_35988532
          Length = 805

 Score =  754 bits (390), Expect = 0.0
 Identities = 401/405 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagaaattttgacctccatgaggctggaactgctagccagtacagcccatggaggggc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacagaaatcttgacctccatgaggctggaactgctagccagtacagcccatggaggggc 260

                                                                       
Query: 61  cctactgggtgggttgttcatagcattctcagcaccctccaaccacacagtggcttttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctactgggtgggttgttcatagcattctcagcaccctccaaccacacagtggcttttgg 320

                                                                       
Query: 121 agtacctggctgggccacctacctgggtcgagtgcaaggagttaatctccgtgcagaatc 180
           ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 agtacctggatgggccacctacctgggttgagtgcaaggagttaatctccgtgcagaatc 380

                                                                       
Query: 181 ttgctggagtgactctgagcacagtaagcatcagcctctggtatcagacaggtttctgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgctggagtgactctgagcacagtaagcatcagcctctggtatcagacaggtttctgag 440

                                                                       
Query: 241 acctgtttaaatatacattatgacatgtgcctgagtataaagaanggagaagtgtcattg 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 acctgtttaaatatacattatgacatgtgcctgagtataaagaagggagaagtgtcattg 500

                                                                       
Query: 301 tcaccactctgaacctctgtcgtcagaacattgtagaggaacagctggtgttaaagcggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaccactctgaacctctgtcgtcagaacattgtagaggaacagctggtgttaaagcggg 560

                                                        
Query: 361 tagccaacatcctcatcaacttgtatggcatgactgctgtgctgt 405
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagccaacatcctcatcaacttgtatggcatgactgctgtgctgt 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)