Query= MSMg01no493_e23.b1 MSMg01no493_e23.b1 CHROMAT_FILE:
MSMg01no493_e23.b1 PHD_FILE: MSMg01no493_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:47 2005
(568 letters)
>mm_chr3_118805039_118806007
Length = 969
Score = 1064 bits (550), Expect = 0.0
Identities = 560/564 (99%), Gaps = 3/564 (0%)
Strand = Plus / Plus
Query: 6 gaattctacattcaaagacacaataaaaggactatagatcagcaatgtcaagatattctg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctacattcaaagacacaataaaaggactatagatcagcaatgtcaagatattctg 265
Query: 66 catggcttgtctttatcaaaataagcaatctttttattaaggcaaccgagaaagagtaca 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 catggcttgtctttatcaaaataagcaatctttttattaaggcaaccgagaaagagtaca 325
Query: 126 tttatggattgaagggagtgtgtttaatatgtccatatccatctagattgacagttctca 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tttatggattgaagggagtgtgtttaatatgtccatatccatctagattgacagttctca 385
Query: 186 cagacatgaatttccccagagagtcagtgttactagtgtcagtggatagcatcatttact 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cagacatgaatttccccagagagtcagtgttactagtgtcagtggatagcatcatttact 445
Query: 246 tcaatgttccattattaaattgataacaagataattcctctgcttctcagagacatgaca 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcaatgttccattattaaattgataacaagataattcctctgcttctcagagacatgaca 505
Query: 306 gggtttacaatggttaacactcttattgcatgggatttactgttctagatagtttttaat 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gggtttacaatggttaacactcttattgcatgggatttactgttctagatagtttttaat 565
Query: 366 aagaagcatatttatgtttcaatatcaaaaaaa-tgaagtgaaaacaacatagtaaaata 424
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 566 aagaagcatatttatgtttcaatatcaaaaaaaatgaagtgaaaacgacatagtaaaata 625
Query: 425 aaatgaaaaccaaatatacccagcaaaagaattgtgaattatggaatatttaaaagatat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aaatgaaaaccaaatatacccagcaaaagaattgtgaattatggaatatttaaaagatat 685
Query: 485 cctgtttattatgtgtatcttgactctgtgtgtggtgtgtgtgtgtgtgtgtgtcttcag 544
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 686 cctgtttattatgtgtatcttgactctgtgtgtggtgtgtgtgtgtgtgtgt--cttcag 743
Query: 545 tctttcatctagtgtaactctgtt 568
||||||||||||||||||||||||
Sbjct: 744 tctttcatctagtgtaactctgtt 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 969
Length adjustment: 10
Effective length of query: 558
Effective length of database: 959
Effective search space: 535122
Effective search space used: 535122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_e23.g1 MSMg01no493_e23.g1 CHROMAT_FILE:
MSMg01no493_e23.g1 PHD_FILE: MSMg01no493_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:47 2005
(574 letters)
>mm_chr3_118977459_118978430
Length = 972
Score = 1067 bits (552), Expect = 0.0
Identities = 568/574 (98%), Gaps = 2/574 (0%)
Strand = Plus / Minus
Query: 1 agttacaatggaagaggggcagatatattatccaccccacccccaccccactgaaacacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 agttacaatggaagaggggcagatatattatccaccccacccccaccccactgaaacacc 713
Query: 61 ctgcccaattttaagttcaagtttgttcaatttgtgatcatccaaaggatattttactac 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ctgcccaattttaagttcaaatttgttcaatttgtgatcatccaaaggatattttactac 653
Query: 121 tgatttttttttcaaattttagctaaacttttaaaaacatatttttctgactgaattata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tgatttttttttcaaattttagctaaacttttaaaaacatatttttctgactgaattata 593
Query: 181 gtctcatttcagctaatggtaagatttgtatataaatctataattttctgccacaaaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gtctcatttcagctaatggtaagatttgtatataaatctataattttctgccacaaaatc 533
Query: 241 actatgggtgggaactttatatttttaatggaattctttgggagccaatgttctgtagag 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 532 actatgggtgggaactttatatttttaatgaaattctttgggagccaatgttctgtagag 473
Query: 301 ttttgcaaaaattatttacaacattccctgccacagctgaaaaacaagagggtttttttt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ctttgcaaaaattatttacaacattccctgccacagctgaaaaacaagagggtttttttt 413
Query: 361 tttccgattgtgtgaaccattgtattcatgatctgagttttgctaaagataataaataac 420
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tt--cgattgtgtgaaccattgtattcatgatctgagttttgctaaagataataaataac 355
Query: 421 tcaagcacagttaacacacaatgtttctggtctacatcatgtagtcaatacatgcatggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tcaagcacagttaacacacaatgtttctggtctacatcatgtagtcaatacatgcatggg 295
Query: 481 tgaccagtggctatgatatgacctggtgtgaaaagacacagtgaggcccctccaggaaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tgaccagtggctatgatatgacctggtgtgaaaagacacagtgaggcccctccaggaaac 235
Query: 541 ccagcaacaggggctgaatgcataaatcattctg 574
||||||||||||||||||||||||| ||||||||
Sbjct: 234 ccagcaacaggggctgaatgcataagtcattctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 972
Length adjustment: 10
Effective length of query: 564
Effective length of database: 962
Effective search space: 542568
Effective search space used: 542568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
