Query= MSMg01no493_f02.b1 MSMg01no493_f02.b1 CHROMAT_FILE:
MSMg01no493_f02.b1 PHD_FILE: MSMg01no493_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:48 2005
(668 letters)
>mm_chr3_97384351_97385418
Length = 1068
Score = 1106 bits (572), Expect = 0.0
Identities = 646/690 (93%), Gaps = 32/690 (4%)
Strand = Plus / Plus
Query: 5 gaattccacacccctaaaccccttaccccataaaaacccctagctttcgagcctcgtggc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacacccctaaaccccttaccccataaaaacccctagctttcgagcctcgtggc 264
Query: 65 cgacattcgttatctcctgtgtgggatgcatgtcggtccggagctccgtcattaaacgac 124
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 caacattcgttatctcctgtgtgggatgcatgtcggtccggagctccgtcattaaactac 324
Query: 125 ctcctgtaattacatcaaggccttttcgtgattctttgggtgcgcgccagattgggaatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcctgtaattacatcaaggccttttcgtgattctttgggtgcgcgccagattgggaatt 384
Query: 185 gagtgggggtttccccactaggttctatcactacgaaggacaaaagcacactctgagaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagtgggggtttccccactaggttctatcactacgaaggacaaaagcacactctgagaaa 444
Query: 245 gacccgcctccgtaacagactgccgggaagaccagagtgccatgagaggcctgagagacc 304
|||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 445 gacctgcctctgtaacagactgccaggaagaccagagtgccatgagaggcctgagagacc 504
Query: 305 cacacctcccaccccgcacacaagtcaacacagaatggatcgcacaccataagacctgga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cacacctcccaccccgcacacaagtcaacacagaatggatcgcacaccataagacctgga 564
Query: 365 ttccaactcacttccttcctctggttctaggttttctcctgctgctgctgctgctgctgc 424
|||||| |||||||||||||||||||||||| || ||||| |||||||||||||||| |
Sbjct: 565 ttccaattcacttccttcctctggttctaggcttcctcctcctgctgctgctgctgc-g- 622
Query: 425 tgcaggcagagcatcaggggtccactggccatctttggtttctcccaggatagacttcag 484
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 623 ----ggcagagcatcaggggtccactggccatctttggtttctcccaggatggacttcag 678
Query: 485 gtctatatcctccatggagctcccctcagaggacagcagtttatccaagccgaatttgag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gtctatatcctccatggagctcccctcagaggacagcagtttatccaagccgaatttgag 738
Query: 545 aatctcacttaacttggacagagaaaacaaaaaaagtctagttaattctgctacacagaa 604
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 739 aatctcacttaacttggacagagaagacaaaaaaagtctagttaattctgctacacagaa 798
Query: 605 aaactgtctcaaaaaaaaaa--------------------------aaagaaagagctgt 638
|||||||||||||||||||| ||||||||||||||
Sbjct: 799 aaactgtctcaaaaaaaaaacaaaaaacaaaaacaaaaaaacaaaaaaagaaagagctgt 858
Query: 639 ggggatgcgggtgacttgctcacggctggg 668
|||||||||||||||||||||||||||||
Sbjct: 859 agggatgcgggtgacttgctcacggctggg 888
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_f02.g1 MSMg01no493_f02.g1 CHROMAT_FILE:
MSMg01no493_f02.g1 PHD_FILE: MSMg01no493_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:48 2005
(558 letters)
>mm_chr3_97521759_97522716
Length = 958
Score = 1079 bits (558), Expect = 0.0
Identities = 558/558 (100%)
Strand = Plus / Minus
Query: 1 agaggcttctgagaaggcccttgggatgggaacacagagagggtggagtggagatttcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 agaggcttctgagaaggcccttgggatgggaacacagagagggtggagtggagatttcca 699
Query: 61 actctttctttcaagaggttgagtgagtgtttattacaagctgcttctgattggcactgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 actctttctttcaagaggttgagtgagtgtttattacaagctgcttctgattggcactgt 639
Query: 121 gaactgccaaatggcagaactgttgtggtaaacacatggatgcacgcagtccacagcact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gaactgccaaatggcagaactgttgtggtaaacacatggatgcacgcagtccacagcact 579
Query: 181 cagacataggcatcactgttacatagagggtaacctcagactgccctgattcttgattgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cagacataggcatcactgttacatagagggtaacctcagactgccctgattcttgattgg 519
Query: 241 gactttttgcagctggagaacaagtctcaggcccaagactctggacaccagccagaattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gactttttgcagctggagaacaagtctcaggcccaagactctggacaccagccagaattt 459
Query: 301 agcctcccgggctccaccaaacacctgcgttcccagctggctcagtgcagacaacgatac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agcctcccgggctccaccaaacacctgcgttcccagctggctcagtgcagacaacgatac 399
Query: 361 caagatctccaggagaagttgctcatctcagaagctaccgtgtttgcccaggcaaaccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 caagatctccaggagaagttgctcatctcagaagctaccgtgtttgcccaggcaaaccag 339
Query: 421 ctggagaagtacagagccgtattcagtgagtgtcaccagctcactgtcacctccatgtcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ctggagaagtacagagccgtattcagtgagtgtcaccagctcactgtcacctccatgtcc 279
Query: 481 tctgttcacaaagtcacctgtttctcacattctttcaaccccaacctgtgaacacttcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tctgttcacaaagtcacctgtttctcacattctttcaaccccaacctgtgaacacttcag 219
Query: 541 ccatgatacactgtctta 558
||||||||||||||||||
Sbjct: 218 ccatgatacactgtctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
