Query= MSMg01no493_f07.b1 MSMg01no493_f07.b1 CHROMAT_FILE:
MSMg01no493_f07.b1 PHD_FILE: MSMg01no493_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:49 2005
(625 letters)
>mm_chr3_119754393_119755417
Length = 1025
Score = 1098 bits (568), Expect = 0.0
Identities = 611/628 (97%), Gaps = 8/628 (1%)
Strand = Plus / Plus
Query: 4 ggaattccaagtgggataaatttacatttaaaaaaattcaattgtatagaggttcaaaaa 63
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaagtgggataaatttacattttaaaaaattcaattgtatagaggttcaaaaa 263
Query: 64 gtttttaaaaagtaagagtcttcaaatattttctttaaagtgtttcagaatgtattactt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtttttaaaaagtaagagtcttcaaatattttctttaaagtgtttcagaatgtattactt 323
Query: 124 atttaaatagtagtacttatttatttaactgccaagcatttcatgcctttgaaatgtatc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atttaaatagtagtacttatttatttaactgccaagcatttcatgcctttgaaatgtatc 383
Query: 184 aatttagaacatgtgtttttttaaagctaattccccaacatattgcaacatgtaatttga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatttagaacatgtgtttttttaaagctaattccccaacatattgcaacatgtaatttga 443
Query: 244 aattagtcaggtgtgaaaaattaaaatattttaacaattatttgagaattttatacagtg 303
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 444 aattagtcaggtgtgaaaaattaaaatattttaacaattatttgagaatttaatacagta 503
Query: 304 tgctttgatggtattgatccctccctcaactcttcccggagacacctcctacaaactccc 363
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 504 tgctttgatggtattgatccctccctcaactcttcctggagacacctcctacaaactccc 563
Query: 364 tatgattccaacttgttctctctcggcttctctgtctgtctgtttgtctctgcctatctc 423
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 564 tatgattccaacttgttctctctcggcttctctgtctgtctgtttgtatctgcctatctc 623
Query: 424 tgtctctctgtctct--gtctct--ctctctctctgt--ctgactctctgttactctctc 477
| ||||| |||||| |||||| |||||||||||| |||||||||||||||||||||
Sbjct: 624 tatctct--gtctctccgtctctgtctctctctctgtgtctgactctctgttactctctc 681
Query: 478 ttctaaggagtctaatttgtgccactcaaatgctcttgcatgtggagctctcctctgaag 537
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tcctaaggagtctaatttgtgccactcaaatgctcttgcatgtggagctctcctctgaag 741
Query: 538 cttagtggcactacctgggcttacattcttaaagaaaactgacttttcctctcgcagaag 597
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 742 cttagtggcactacctgggcttacattcttaaagaaaactgacttttcctctctcagaag 801
Query: 598 ctatgggatgagacataggagaggaaca 625
|||||||||| |||||||||||||||||
Sbjct: 802 ctatgggatgggacataggagaggaaca 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_f07.g1 MSMg01no493_f07.g1 CHROMAT_FILE:
MSMg01no493_f07.g1 PHD_FILE: MSMg01no493_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:49 2005
(585 letters)
>mm_chr3_119795797_119796781
Length = 985
Score = 1077 bits (557), Expect = 0.0
Identities = 578/585 (98%)
Strand = Plus / Minus
Query: 1 ctctacagctctggggaacagtgagcttactgtattgtatacagatgccccaaagagttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ctctacagctctggggaacagtgagcttactgtattgtatacagatgccccaaagagttt 726
Query: 61 attatctctcacccattgatggatcatttgctatgacttgatatatgatgcagtcaataa 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 attatctctcacccattggtggatcatttgctatgacttgatatatgatgcagtcaataa 666
Query: 121 tgatgtcttcttggatttacacagaaaaattagatagtatgtgcaggactttgttttcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tgatgtcttcttggatttacacagaaaaattagatagtatgtgcaggactttgttttcat 606
Query: 181 tttgacatcgataaagatcttgtatcaaaggcatagaagaaagaatagccatttcttcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tttgacatcgataaagatcttgtatcaaaggcatagaagaaagaatagccatttcttcag 546
Query: 241 caccagcatttgtccctgcttgcttccttagcttgatggaagacagttaccaaagttgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 caccagcatttgtccctgcttgcttccttagcttgatggaagacagttaccaaagttgac 486
Query: 301 tggccaaagtgaaggaatagtagaacaagaagcagaagaggggaaagcgatgagcacagc 360
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 485 cggccaaagtgaaggaatagtagaacaagaagcagaagaggggaaatcgatgagcacagc 426
Query: 361 agtttcctgttcttggtgtaggcttcctgttccctcttagaccagggctaaaagatagga 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 425 agtttcctgttcttggtgtaggcttcctgttccctcttagaccaggactaaaagatagga 366
Query: 421 gtcttgatgcagaacaaggatagaaggtagaatcatacaactgtaattatttctgggcaa 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 365 gtcttgatgcagaacaaggatagaaggtagaatcatacaaatgtaattatttctgggcaa 306
Query: 481 atgacagtttggggtgtggtaaaagtgtggatgaatcatagagcatgatgttttcatcct 540
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 305 atgacagtttggggtgtggtaaaagtgtggatgaatcatagaacatgatgtttttatcct 246
Query: 541 gagatatatgactcagtaaagaaatgagtgaatctgtcctctcag 585
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gagatatatgactcagtaaagaaatgagtgaatctgtcctctcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
