BAC Information

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BAC

Clone NameMSMg01-493J01
Chromosome3 (Build37)
Map Location 121,383,527 - 121,383,841
singlet/doubletsinglet
Overlap gene4930432M17Rik
Upstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik
Downstream geneF3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493J01.T7 (MSMg01no493_j01.b1)MSMg01-493J01.TJ (MSMg01no493_j01.g1)
ACCAG571053AG571054
length740617
length of high quality
(start - end)		659 (45 - 703)---
definitionCHROMAT_FILE: MSMg01no493_j01.b1 PHD_FILE: MSMg01no493_j01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:09 2005CHROMAT_FILE: MSMg01no493_j01.g1 PHD_FILE: MSMg01no493_j01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTATACATTCTGATCACAGCATCCCTCTCTTCCCAGTCCCTCCTC
CCACACGGCCCCTACTCCTGTCCCCTCCACTCTGGGATGAGGGGCAGGAA
GTACCTCTCTGGAAACCAACTCACCTTGCCACCTCAACTCACTGCAAGCC
TAGGGGCATCCTTTCCCACTGAGGCCAGACAAGGCAGCCCAGCTAAGGGA
GCAGTACCCACAGGCAGGCAACAGAGTCAGGAACAGAACCTATTCCAGTT
GTTGGGAGACCAGCATGAAGACCAAGCCACACATCTGCTATACCTTGCAT
CTACTGTACTTCTGCTAGACATTGTTTGCTCTTTGGATGTAGGGTCAGTC
TCTGGGAGCCCCCAAGTGTCTCTGTTGGTCTTCCTGTAGAGTCCCTATCA
CCTCTGGACTCCGCAATCCTTCCCCCAACTATTCCACAAGATTTCCTAAG
CTCCGTCTAATATTTGGCTTGGGGGTCTCTGCATCTGTTTAGGTCATCTG
CTAGGTGGAGCCTCTCAGAGGACAGTTATACGAGGCTCTGAAGGCAGAAA
AATTTTGAGCAGTCGTAGCAGTAGAGAAAATTTCAAATGCTGCAGATAGC
AGGAAGTTGGGTTTCTTAGGGTGAGGAGACACAAATACTGCAGATATACA
GACTCTTGCAAAAGCGGGGGGTGGGGGAAGAGGTGGGTGT

ACCTGCNCCCCGTTTCACTTNGTACCTTAAANATTTCGATTCCAAGAATT
GGCTCCTTGGGATTGAATCGTTGGCTGGGGGGGGGGGCGGGGGGATGTTT
TTTTTTTTTTGTGTTGTTTTCCTAAAAAACCTTTTTTTTTTTNCCCCCTC
TTTTCCTTACCTCTTCCCCCGCCTGGTCTTTGGGGGGCCCCCGCCCNNNN
NNNNNNNNTTATGGTAGATAGAGGTTCCCCACAGCTTTGAGTTGTATTGT
GTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTNNNNNNNNNNNCNNNNNCNNNNNNNN
NNNCNNNNNNNCNCNNTCCTTCCCCTTTTCCCTTTCCCNCCCCCCCCTTC
CCCCTCCCCCCCCCCTCTCCCTTCCTCCTCCCCCCCCCCCCCCTTCTTTT
TTTTTTTCTCCCCTTCCTCCTCTCATCCCCCCCCCNTCCCCTCTAGGGTA
TTGTGGGGTGGGGTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_j01.b1 MSMg01no493_j01.b1 CHROMAT_FILE:
MSMg01no493_j01.b1 PHD_FILE: MSMg01no493_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:09 2005
         (659 letters)



>mm_chr3_121382783_121383841
          Length = 1059

 Score =  565 bits (292), Expect = e-165
 Identities = 310/316 (98%), Gaps = 1/316 (0%)
 Strand = Plus / Minus

                                                                        
Query: 344  tgtagggtcagtctctgggagcccccaagtgtctctgttggtcttcctgtagagtcccta 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 tgtagggtcagtctctgggagcccccaagtgtctctgttggtcttcctgtagagtcccta 1000

                                                                        
Query: 404  tcacctctggactccgcaatccttcccccaactattccacaagatttcctaagctccgtc 463
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 999  tcacctctggactcctcaatccttcccccaactattccacaagatttcctaagctccgtt 940

                                                                        
Query: 464  taatatttggcttgggggtctctgcatctgtttaggtcatctgctaggtggagcctctca 523
            |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 939  taatatttggcttgggggtctctgcatctg-ttaggtcagctgctaggtggagcctctca 881

                                                                        
Query: 524  gaggacagttatacgaggctctgaaggcagaaaaattttgagcagtcgtagcagtagaga 583
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 880  gaggacagttatacgaggctctgaaggcagaaaaattttgagcagtcatagcagtagaga 821

                                                                        
Query: 584  aaatttcaaatgctgcagatagcaggaagttgggtttcttagggtgaggagacacaaata 643
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820  aattttcaaatgctgcagatagcaggaagttgggtttcttagggtgaggagacacaaata 761

                            
Query: 644  ctgcagatatacagac 659
            ||||||||||||||||
Sbjct: 760  ctgcagatatacagac 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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