Query= MSMg01no493_j04.b1 MSMg01no493_j04.b1 CHROMAT_FILE:
MSMg01no493_j04.b1 PHD_FILE: MSMg01no493_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:10 2005
(709 letters)
>mm_chr3_120393252_120394360
Length = 1109
Score = 1340 bits (693), Expect = 0.0
Identities = 702/705 (99%)
Strand = Plus / Plus
Query: 5 gaattcctcggccaccgtagccttgttctattttcccccttgacaggacagacagagaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcggccaccgtagccttgttctattttcccccttgacaggacagacagagaaa 264
Query: 65 ccatcagctgaggggaacgtttttcttagataagaagttcaaatactccctttaactgca 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 265 ccatcagctgaggggaacgtttttcttagataagaagttcaaatactccctttaactgta 324
Query: 125 gaaagatcgcctaaatattccacttaataactttagcataatgcactgtttattattaat 184
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaagatcatctaaatattccacttaataactttagcataatgcactgtttattattaat 384
Query: 185 aatattttcagataacaattctgtagtaactctgaactcacagtcagatgtacaactaac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatattttcagataacaattctgtagtaactctgaactcacagtcagatgtacaactaac 444
Query: 245 agcagaaactaaatgtttcatttgatggcaattatcatctggaaaattattatcagtctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agcagaaactaaatgtttcatttgatggcaattatcatctggaaaattattatcagtctg 504
Query: 305 gtccagaagacaagatatttaagggatgactgtctgcacaggctatcagggcacgctacc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtccagaagacaagatatttaagggatgactgtctgcacaggctatcagggcacgctacc 564
Query: 365 cctccatggctctcaggtactggccaaggccagaaggttgcctaaccaaaggattattta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctccatggctctcaggtactggccaaggccagaaggttgcctaaccaaaggattattta 624
Query: 425 ttccccacaataaacacaaaaatgatacaaagacctggactagcttctgacttgagaccc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttccccacaataaacacaaaaatgatacaaagacctggactagcttctgacttgagaccc 684
Query: 485 ttgtgagttcctaagaggactgaggatcccacagccttggagataaagaactatattctg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttgtgagttcctaagaggactgaggatcccacagccttggagataaagaactatattctg 744
Query: 545 agagttttggggttgtggcaggtctctagaaaactttttcatctggaagcagatgaggac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agagttttggggttgtggcaggtctctagaaaactttttcatctggaagcagatgaggac 804
Query: 605 acaggagctgcaggtgaagctgtgtggaggacatcccagaaacaattgcagtctccatct 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 acaggagctgcaggtgaagctgtgtggaggacatcccagaaacaattgcagtctccatct 864
Query: 665 attgaaatcatgtatgccaactgctgaattgaatactttgcttac 709
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 attgaaatcatgtatgccaactgctgaattgaatactttgcttac 909
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space: 768201
Effective search space used: 768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no493_j04.g1 MSMg01no493_j04.g1 CHROMAT_FILE:
MSMg01no493_j04.g1 PHD_FILE: MSMg01no493_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:10 2005
(669 letters)
>mm_chr3_120486116_120487185
Length = 1070
Score = 1210 bits (626), Expect = 0.0
Identities = 661/676 (97%), Gaps = 7/676 (1%)
Strand = Plus / Minus
Query: 1 agttgaaattttttgaatgaaagtaggtctttgttgtttatggtttttcttttaactaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 agttgaaattttttgaatgaaagtaggtctttgttgtttatggtttttcttttaactaag 875
Query: 61 aagtaattttatgtgtatagatattttgcctgcatatacttctatataccacatgcagag 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 aagtaattctatgtgtatagatattttgcctgcatatacttctatataccacatgcagag 815
Query: 121 ctagtactcagagataccatagagggcaatggattcccctggaactgaggttaaagatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 ctagtactcagagataccatagagggcaatggattcccctggaactgaggttaaagatag 755
Query: 181 ttacaagccatcatataggtgctgggaatcaactcaggttttctggaagagtggccagta 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 ttacaagccatcatataggtgctgggaatcaactcaggttttctggaagagtggccagtg 695
Query: 241 cttttacctgctgagtcatccctccagaccctatttaatgttcgtttaatgcagtatata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 cttttacctgctgagtcatccctccagaccctatttaatgttcgtttaatgcagtatata 635
Query: 301 aacgcagaaatctggagcaattacattcaaataaatgatggataggagttgcctaaatga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 aacgcagaaatctggagcaattacattcaaataaatgatggataggagttgcctaaatga 575
Query: 361 g-aaaaaaaatgtcacctagggtcctgacgtgttagcgtaagaaaaccagctctcttttc 419
| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 574 gaaaaaaaaatgtcacctagggtcctgacatgttagcataagaaaaccagctctcttttc 515
Query: 420 aaacaggatgagatattttagtttgtagccaaatatgagtgatcatgttccaaagtggaa 479
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aaacaggatgagatattttattttgtagccaaatatgagtgatcatgttccaaagtggaa 455
Query: 480 atagtttgctgaagttttttttaaaaataatatgtataga------tgtgtgtgtgtgtg 533
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 454 atagtttgctgaagttttttttttaaataatatgtatagatgtgtgtgtgtgtgtgtgtg 395
Query: 534 tgtgtgtgtgtctatgcacagaatgaagaaagtcataaatcaagatagtttttaattaca 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tgtgtgtgtgtctatgcacagaatgaagaaagtcataaatcaagatagtttttaattaca 335
Query: 594 ttgttggaaacatcacgtagatagtaactatagggaggagtggagacctctgctatggtt 653
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ttgttggaaacatcaggtagatagtaactatagggaggagtggagacctctgctatggtt 275
Query: 654 ctcagatgttacctgt 669
||||||||||||||||
Sbjct: 274 ctcagatgttacctgt 259
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1070
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1060
Effective search space: 698540
Effective search space used: 698540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
