NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTACAGATTTATAAAAGGCTTGCTCTTGGAAAATAAAATGCTG
TTACTATGGTGACCAGCTGAGATTATGGATAATGAGAGTACCATGTTTTC
CACTCTCCGAGGAGCTATTGTTCTCCACATATTGTTCTATGCTGAACATT
ACTGACCTTCAAAATGTATCAAAATCATTGGTTCTTTTCTTTCTAAAATA
AAGGATATTTTATTCAGTACCTTCGTGTGACTGAGCAGCTGTGCACAACA
GTTAATCACATATTCAAACAAATACACAATATGGAAAAAACTATTATTCA
ATATAATTCTTCACACATTGATACAGGAAACTGATCCATTGATCAAAACT
ACATGATATAATAGTTTCCACAACTTTATGTGATCTTGTATTCTTTACAT
TTTCCCTCTACCAGGATAAGAGAAATCAAGAAATTTGCCCCAAACATATC
CTTTCTACAGTAGCACTAAACATCTACCTAGAATTAGCTGGAGACAAGCA
CTTGCTTCCACTGAGAAGGGAATACAAAAATTTGCCACTGTATTTAGAGA
GAAATTATGAAACACATACTAGTGTGTTGTTTCTAANATTAGAATTACAG
AGAANAAAACTATAGAGAAACAAAACTCTTTTATATAAAAAAGATTATAA
TGCATTGAGAGGTA

NAACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATC
ATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTG
TCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGT
CCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAA
TCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTG
TTGATTTTGTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCTC
TGAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAG
GGAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGA
AGGCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAG
GTGGCCAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTGTGG
CTCTTGCCGGGAAGGTGTCTGGTTGTCTGGAGCTGAGGATGGTGCCGCCC
CAGAATCTCTGCGACTCTCTCGCCCGTCCCAGAAACGGCTGGCACTCTGT
ATTCCACACGGTCACCCGTGCAGCCTGCCCTCCGAGGAGTCCCGGAGCCA
AGAAGGCTCCCGCCGGCG

Query= MSMg01no493_j17.b1 MSMg01no493_j17.b1 CHROMAT_FILE:
MSMg01no493_j17.b1 PHD_FILE: MSMg01no493_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:13 2005
         (599 letters)



>mm_chr3_5765691_5766689
          Length = 999

 Score = 1122 bits (580), Expect = 0.0
 Identities = 591/595 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctacagatttataaaaggcttgctcttggaaaataaaatgctgttactatggtga 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gaattctacagaactataaaaggcttgctcttggaaaataaaatgctgttactatggtga 740

                                                                       
Query: 65  ccagctgagattatggataatgagagtaccatgttttccactctccgaggagctattgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ccagctgagattatggataatgagagtaccatgttttccactctccgaggagctattgtt 680

                                                                       
Query: 125 ctccacatattgttctatgctgaacattactgaccttcaaaatgtatcaaaatcattggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctccacatattgttctatgctgaacattactgaccttcaaaatgtatcaaaatcattggt 620

                                                                       
Query: 185 tcttttctttctaaaataaaggatattttattcagtaccttcgtgtgactgagcagctgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tcttttctttctaaaataaaggatattttattcagtaccttcgtgtgactgagcagctgt 560

                                                                       
Query: 245 gcacaacagttaatcacatattcaaacaaatacacaatatggaaaaaactattattcaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gcacaacagttaatcacatattcaaacaaatacacaatatggaaaaaactattattcaat 500

                                                                       
Query: 305 ataattcttcacacattgatacaggaaactgatccattgatcaaaactacatgatataat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ataattcttcacacattgatacaggaaactgatccattgatcaaaactacatgatataat 440

                                                                       
Query: 365 agtttccacaactttatgtgatcttgtattctttacattttccctctaccaggataagag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 agtttccacaactttatgtgatcttgtattctttacattttccctctaccaggataagag 380

                                                                       
Query: 425 aaatcaagaaatttgccccaaacatatcctttctacagtagcactaaacatctacctaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaatcaagaaatttgccccaaacatatcctttctacagtagcactaaacatctacctaga 320

                                                                       
Query: 485 attagctggagacaagcacttgcttccactgagaagggaatacaaaaatttgccactgta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 attagctggagacaagcacttgcttccactgagaagggaatacaaaaatttgccactgta 260

                                                                  
Query: 545 tttagagagaaattatgaaacacatactagtgtgttgtttctaanattagaatta 599
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 259 gttagagagaaattatgaaacacatactagtgtgttgtttctaaaattagaatta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)