Query= MSMg01no493_o07.b1 MSMg01no493_o07.b1 CHROMAT_FILE:
MSMg01no493_o07.b1 PHD_FILE: MSMg01no493_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:36 2005
(602 letters)
>mm_chr3_51749648_51750649
Length = 1002
Score = 890 bits (460), Expect = 0.0
Identities = 472/476 (99%)
Strand = Plus / Minus
Query: 127 attctctggggtggttataataaaataccataaccgggtagcttttaaatgccaggaaat 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 attctctggggtggttataataaaataccataaccgggtagcttttaaatgccaggaaat 943
Query: 187 tatttctttcaattctagaggtcaaagttgaagatcaaggtcagaatccagtgtccagtg 246
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 942 tatttctttcaattctagaggtcaaagttgaagatcaaggccagaatccagtgtccggtg 883
Query: 247 agtctctgcttccataccgcagggatgtcagttagcaatggtttctcatgaaggggagta 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 agtctctgcttccataccgcagggatgtcagttagcaatggtttctcatgaaggggagta 823
Query: 307 gactgctctctggacgatctgtaagggcactaaccccattcatgagactccactctccta 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gactgctctctggacgatctgtaagggcactaaccccattcatgagactccactctccta 763
Query: 367 agctaatcagctcccactgttagactccaccgatgcctgagcaggggagtacaagtgttc 426
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 762 agctaatcagctcccactgttagactccaccgatgcctgagcaagggagtacaagtgttc 703
Query: 427 agacttgactcttaggctgccttgcattgttttctaagagggctcgttccacttgaaggc 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 agacttgactcttaggctgccttgcattgttttctaagagggctcgttccacttgaaggc 643
Query: 487 tggagatagatatttataaaacaaatagattatataatatggtggaatatattaaataaa 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tggagatagatatttataaaacaaatagattatataatatggtggaatatattaaataaa 583
Query: 547 aataaagcgggatgagacaggtggggggtatctgtctgtctgtataaagtatagtc 602
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 582 aataaagcgggatgagacaggtggggggtgtctgtctgtctgtataaagtatagtc 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_o07.g1 MSMg01no493_o07.g1 CHROMAT_FILE:
MSMg01no493_o07.g1 PHD_FILE: MSMg01no493_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:36 2005
(573 letters)
>mm_chr3_51669948_51670921
Length = 974
Score = 1081 bits (559), Expect = 0.0
Identities = 571/575 (99%), Gaps = 2/575 (0%)
Strand = Plus / Plus
Query: 1 ctcgggttcccctgagttagctagattaggatctcctgcatttagacactgggatccaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ctcgggttcccctgagttagctagattaggatctcctgcatttagacactgggatccaga 259
Query: 61 ctgcaattattgctggattctgat-ttttgaagtctgtgattagatttttaaagatgcat 119
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 260 ctgcaattattgctggattctgatattttgaagtctgtgattagatttttaaagatgcat 319
Query: 120 attcaaatcacacaggatatttcctacttgctctggggcatctcataactagaaccaggg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attcaaatcacacaggatatttcctacttgctctggggcatctcataactagaaccaggg 379
Query: 180 aactgtactctagaatggggttttcctgacctcaggggatcatgaattgaatgcaagatt 239
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 380 aactgtagtctagaatggggttttcctgatctcaggggatcatgaattgaatgcaagatt 439
Query: 240 gacaaatttctataatcgtttccacaaagggtatattaatatattaataattaatatata 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gacaaatttctataatcgtttccacaaagggtatattaatatattaataattaatatata 499
Query: 300 aataacatatataaacagttttggctcctctgagtatagtaatatctgtcacccttcccc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aataacatatataaacagttttggctcctctgagtatagtaatatctgtcacccttcccc 559
Query: 360 acaccacactaccaacagatggtggaaggacattgtgtatctgtgcaggctctgtgccag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acaccacactaccaacagatggtggaaggacattgtgtatctgtgcaggctctgtgccag 619
Query: 420 tggctttagggtcaacc-atttccaagaacgtgggccatcccggaaaacatacacattca 478
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tggctttagggtcaacccatttccaagaacgtgggccatcccggaaaacatacacattca 679
Query: 479 cagatgagctgacaaaggttgagtgcatttgtttgaaagagatctccccaagaggcagaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cagatgagctgacaaaggttgagtgcatttgtttgaaagagatctccccaagaggcagaa 739
Query: 539 caacacagaaaggaaaaggaaaattgtaccgcaac 573
|||||||||||||||||||||||||||||||||||
Sbjct: 740 caacacagaaaggaaaaggaaaattgtaccgcaac 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 974
Length adjustment: 10
Effective length of query: 563
Effective length of database: 964
Effective search space: 542732
Effective search space used: 542732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
