BAC Information

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BAC

Clone NameMSMg01-494H24
Chromosome3 (Build37)
Map Location 95,875,112 - 95,875,644
singlet/doubletsinglet
Overlap genenone
Upstream genePip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45
Downstream geneLOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494H24.T7 (MSMg01no494_h24.b1)MSMg01-494H24.TJ (MSMg01no494_h24.g1)
ACCAG571765AG571766
length782777
length of high quality
(start - end)		566 (32 - 597)532 (60 - 591)
definitionCHROMAT_FILE: MSMg01no494_h24.b1 PHD_FILE: MSMg01no494_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:21 2005CHROMAT_FILE: MSMg01no494_h24.g1 PHD_FILE: MSMg01no494_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTATACGACTCACTATAGTTCGAGGATCCGCGGAATTCACTCTGTATT
CCAAGCTGGCCTCGAACTCAGAAATTCGCCTGCCTCTGCCTCCCAAGTGC
TGGGATTACAGGCATGTGCCACCTCTGCCCGGCCCAAGGCAACTTTTATA
AAGAACAACATTTAATTGGGGCTGGCTTACAGGGTCAGAGAGGTTATGTC
CATTATCATGAAGGAAGGCAGCATCTGGGCAGATGTGGGGCTGGAGGAGC
TTGGAGTTCTATCTCTTGTTCAGACGGTAATTCCCATCTACATGGGACAG
AAGGCGTTCCCTCATGTCTCCTGGATCCCTGGATCCTGTTGAAGTTACCG
CCCCCACACTCCCACAGGAGAGGCTCATGGCTTTCAGTCACTTAGACAAC
GGTCCAAGCTTCTGACCTTCAGGCTAGACTCCTCCCAGTTACCTAGCAAC
AGCAAGATAACAAGCCCACTATAAGAGGGGCTGCTTGGCCCACCTCACTC
TCTCCCTCTTACTCTCTAAGCTTTTACCTCTCTCTCTTTAAGCTTTCTTA
CTCTCTAGCTTTTCTTCTCTCTCTCCTTTTCCCCCCTCTCTCCCCTTAGC
CATGGCCAGTTTCTCTTTTACCTTCTCTCCTTCCTCCTGCCTTTCTACAA
TAAAGATCTAAAATCATAGACTGGTTCTGTTCATCAATGCCCGCTGTGCT
TGGATGGCCGGGATAGCTTTCTTCTAGCAAGCTACACCTAACCTCCCATC
AGAAGGCTTTCTACACTTAAGTCACGGAAAGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCACTAGGAATCAAAGACAGGAAATATGGGCTGGAGAGATGG
CTCAGTGGTTAAGAGTATCGGCTGTTCTTCTGGAGGACCAGGGTTCAAGA
CCCAGCACCTACATGGTGGTGGTTCACAACCATCTGTAATTCCAGCTCTA
GGGCATCTTCTGGCCTCTGTGGACACGGGACATGCGTATACAGACATACA
CATGAGCAAAGTATATGAAAAAAAATTTAAACTTAAGACAAAGGAAATAT
TCCCTGAATCTCCCACCTAAGAAAATGATCTAATCCAGACAAAAGAAGGA
ATGAACAAGCCACACACAGGACCCATACTCAAAGACAGAAGAAAGAAATG
TTCTGAAAAAAGAATGCCAAGGACAGCTGCTCTGCCCCTTACACCGTTAT
GAGGATCTCAGCAGATCCAAGACAGAGGTGTGACATTGTTAAACCTTTAT
CATCACTCTGTTCCAAGAAATGAAAAGCAATGTACAGCGGCTGACTATGA
CCGGAGGAAGAATTTTATGTAAACACTAAAACTGGAAGTGCCTAGAAATT
AAGGGCCGACCCCCACTCCATCCCCTCACCCCTGCTCTTAGGTAAAAAGA
AAGGTTGGGGGTGGAGAGTTGCTCACTGGGTAAGAGCACTAACTGCTCTT
CAGAAGACAGGCATTTTGATTTCAGCACCACCGGGGGCAGCTCAAAATCT
TCGTAACTCCAGCTTCTGGCTTTGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_h24.g1 MSMg01no494_h24.g1 CHROMAT_FILE:
MSMg01no494_h24.g1 PHD_FILE: MSMg01no494_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:21 2005
         (532 letters)



>mm_chr3_95874711_95875644
          Length = 934

 Score =  961 bits (497), Expect = 0.0
 Identities = 524/533 (98%), Gaps = 2/533 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   actaggaatcaaagacaggaaatatgggctggagagatggctcagtggttaagagtatcg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 actaggaatcaaagacaggaaatatgggctggagagatggctcagtggttaagagtatcg 875

                                                                       
Query: 62  gctgttcttctggaggaccagggttcaagacccagcacctacatggtggtggttcacaac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 gctgttcttctggaggaccagggttcaagacccagcacctacatggtggtggttcacaac 815

                                                                       
Query: 122 catctgtaattccagctctagggcatcttctggcctctgtggacacgggacatgcgtata 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 814 catctgtaattccagctctagggcatcttctggcctctgtggacacgggacatgcatata 755

                                                                       
Query: 182 cagacatacacatgagcaaagtatatg-aaaaaaaatttaaacttaagacaaaggaaata 240
           ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 754 cagacatacacatgagcaaagtatatgaaaaaaaaaattaaacttaagacaaaggaaata 695

                                                                       
Query: 241 ttccctgaatctcccacctaagaaaatgatctaatccagacaaaagaaggaatgaacaag 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tcccctgaatctcccacctaagaaaatgatctaatccagacaaaagaaggaatgaacaag 635

                                                                       
Query: 301 ccacacacaggacccatactcaaagacagaagaaagaaatgttctgaaaaaagaatgcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ccacacacaggacccatactcaaagacagaagaaagaaatgttctgaaaaaagaatgcca 575

                                                                       
Query: 361 aggacagctgctctgccccttacaccgttatgaggatctcagcagatccaagacagaggt 420
           |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 574 aggacagccgctctgccccttataccgttatgaggatctcagcagatccaagacagaggt 515

                                                                       
Query: 421 gtgacattgttaaacctttatcatcactctgttccaagaaatgaaaagcaatgtacagcg 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 514 gtgacattgttaaacctttatcgtcactctgttccaagaaatgaaaagcaatgtacagcg 455

                                                                
Query: 481 gctgactatgaccggaggaagaatt-ttatgtaaacactaaaactggaagtgc 532
           |||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 454 gctgactatgaccggaggaagaattcgtatgtaaacactaaaactggaagtgc 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 934
Length adjustment: 10
Effective length of query: 522
Effective length of database: 924
Effective search space:   482328
Effective search space used:   482328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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