BAC Information

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BAC

Clone NameMSMg01-494N05
Chromosome3 (Build37)
Map Location 74,981,973 - 74,982,238
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC619764, LOC667434, LOC100041551, EG667459, BC050789
Downstream geneSerpini2, Wdr49, Pdcd10, Serpini1, Golph4, Fstl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494N05.T7 (MSMg01no494_n05.b1)MSMg01-494N05.TJ (MSMg01no494_n05.g1)
ACCAG572013AG572014
length733740
length of high quality
(start - end)
554 (61 - 614)316 (67 - 382)
definitionCHROMAT_FILE: MSMg01no494_n05.b1 PHD_FILE: MSMg01no494_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:45 2005CHROMAT_FILE: MSMg01no494_n05.g1 PHD_FILE: MSMg01no494_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCTGAGAGGATCCGCGGAATTCAG
CACTGTTCATCAATCCAAGGACAAGAGGACAATGAACAAGTGCACATACA
GTGAAATGATGGAGAAAGGAGAATGAGTTCAACTTGAAAAAAAATTAATT
TTGTAATATAAATAGGGAATAATTGAAATAAAATATAGGTATTTATTTCA
GAAATGATGAGAATTTTTAATATACATCAGTGCAATCAGCATAAAGATAA
TTAATGGTGCTAAAGGAGGATTATAAAAATATTATAAAAGCCTTCAAAGA
TGAAAGTTATGTCATTAAGAAAGATGTGTGTAGAGAAAAGGGGTCTGCCC
GGCCTGGGAGCGCTTTGCCTGAGCATCAGCAGCAGACATCTTGGTTCCAG
GACCCCGCCGTGTGTATTCTGCACAGGTGAGAGTACGGAATACAGAAGCT
AAAAGCTTCTGGGACGGGGGGGAACCACAAAGCTTCTAAGGCAGCCCCCT
TTTCGGGCCCCAGACAGCTGGCCACTTTCCCGGCCAGAGGATAGAGATCT
GACCGGCCCGGGAGCACTTTGCCTGAGCATTGGCAACAGACATCTTGGTT
CTGGGACCCCGCCGAGCATATTCTGCACAGCTCCATAGAATACCAGATGG
TGAAAGGCAAACGTAAGAATCCTACTAACAGAAATCAAGACCACTCACCA
TCATAAGAATGCAGAACTCCCACCTCACCTAGT
GAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTTTTCTTTTTTTAAGTTTCAATATTTTTATTA
TTAGATATTTTATTTATTTCCATTTTAAATTTTATCCCATCGCCTCATTT
TCCCTCAAAAATCCACAATCCCATTCTCCCTCCCCCTGCTCACTAACCTA
CCCACTCCTGCTTCCCTGTCCTCGAATTCCCCTATCTTAACTATCTAAGA
TAATTTTCTCTTTTCTGGCAGGTTCTACAGAGGTATAACACATTTCCTTT
CATGTATTATTCAGAGTTCTTTAAAGGAACAGAACTGGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTTTTTNTTNTTTTTTTTTTTTTTTNNNTTTTTTT
TTTTTTTTTTTTTNTTTTTTTTNTTTTTTTTTNNTTTTTTTTTTNTTTTT
TTTNNTTTTTTTTTTTTTTTTTTTTTTTNTTNTTTTTTTTTTTTTTTTTT
TTTTNTTTTTNTTTTTTTTTNTTTTTTTTTTTTTTTTNNTTTTTTTTTTT
TTTTNTTTTTNNNNNTTTNTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTT
TTTTTTTTTNTTTTTTTTTTTTTTTTTTTNNTTTTTTTTNNTTNTTTTTT
TTTTNTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_n05.b1 MSMg01no494_n05.b1 CHROMAT_FILE:
MSMg01no494_n05.b1 PHD_FILE: MSMg01no494_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:45 2005
         (554 letters)



>mm_chr3_74981769_74982720
          Length = 952

 Score =  414 bits (214), Expect = e-120
 Identities = 257/272 (94%), Gaps = 6/272 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatccaaggacaagaggacaatgaacaagtgcacatacagtgaaatgatggagaaagga 60
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||
Sbjct: 205 caatccaaggacaagaggacaatgaacaagtgcacatacagtaaaacgatggagaaa-ga 263

                                                                       
Query: 61  gaatgagttcaacttgaaaaaaaattaattttgtaatataaatagggaataattgaaata 120
            |||||||||||||||  |||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 264 -aatgagttcaacttg--aaaaaattaattttgtcatataaatagggaataattaaaata 320

                                                                       
Query: 121 aaatataggtatttatttcagaaatgatgagaatttttaatatacatcagtgcaatcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 aaatataggtatttatttcagaaatgatgagaatttttaatatacatcagtgccatcagc 380

                                                                       
Query: 181 ataaagataattaatggtgctaaaggaggattataaaaatattataaaagccttcaaaga 240
           |||||||||||||| | ||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 381 ataaagataattaacgatgctaaaggaggatt-taaaa-tattataaaagccttcaaaga 438

                                           
Query: 241 tgaaagttatgtcattaagaaagatgtgtgta 272
           |||| ||||||||||||||||||||| |||||
Sbjct: 439 tgaaggttatgtcattaagaaagatgcgtgta 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 952
Length adjustment: 10
Effective length of query: 544
Effective length of database: 942
Effective search space:   512448
Effective search space used:   512448
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)