BAC Information

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BAC

Clone NameMSMg01-495F19
Chromosome3 (Build37)
Map Location 123,032,933 - 123,234,754
singlet/doubletdoublet
Overlap geneSec24d, G430022H21Rik, Prss12, EG668804, Ndst3
Upstream geneLOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2
Downstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495F19.T7 (MSMg01no495_f19.b1)MSMg01-495F19.TJ (MSMg01no495_f19.g1)
ACCAG572424AG572425
length739767
length of high quality
(start - end)		623 (54 - 676)644 (74 - 717)
definitionCHROMAT_FILE: MSMg01no495_f19.b1 PHD_FILE: MSMg01no495_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:25 2005CHROMAT_FILE: MSMg01no495_f19.g1 PHD_FILE: MSMg01no495_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,032,933 - 123,033,550)(123,234,114 - 123,234,754)
sequence
CCCCNNTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACA
AATCCGCGGAATTCCAGGCATATCGCTTTGACTATAAAAAAATCAAAATG
TACATATGACAAAACTATTACAAACATAATTAAAAGGCAAAATTGCAGTG
GTTTACAACATATACAAGAGCCAAAAAGTTAGTGAGTTTAAAAAAGAGAA
AACTCATATTTTTCACATATTTCAAAGACATGCTCTCAAAATGATAGATA
CTGAGAACAGTTTGTCTTCTTATCATAACTCCTTTCCTTTAGGATGCGTT
TTGGGGATTTATTGGGTTGTCTGCTTATGAAAACAAAGGACTTCCTGCCC
TGTTTTGTTTTCCTTAGTCCCACCATTCTATTTCCAACATCTGGACCACA
TTGGAAGGAGGCTGGACCACTATGAGAAGCCAGAGCTGTCGCTGGGGTCC
TATGAATATGTCGCTACGTTGGATTACTGCAGAGTGAGTGCTGGCGGGAC
TTAAGTGTTTCTGTGATGCTGTTGATTTTCAGCGAGCGGCTTCTGTATGT
AAAGATATGTATGACTTGGTTCACAGACAGACATTTCCAGGGCATGTGGA
CATATGTCAGAAACAGATCTGACCTAAGTCATTAGCATGAATGGGCTCCT
GAGCTGTCTCATTGTAGTATAGAAAAGGAAACAGNTCTTTCTGGTGGTTT
GTTTGGTTGGTTTGTTTTTGTTTGGTTGCCTGCTTGCTT

CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCGTTGTAGACAAGACTGGCCTTGAAC
TCATGAAAGTCATCCTGGCTTTGCCTCCTGAGTAATGGGACTAAAGGCAT
GCGCCACCACACCCAACCCCATTATCTAACTTATATTTAGTAAGCACTCA
CAAAACAAGGCGCTAAGCTATTCCTTTCTAAAGATCTGTATACCACAGGC
CCAAATGAGAGGAGAAGCGCTGTCTGTCTGTGGATATGTAAATTTAGCAT
ATTGTTATCATTGGTTAATTACGGAAAATAAATCTATTTATAGGCATTTT
TGCTTTAGTGCTAACCTCAAACCGAAATTTAAAAAGATCACTAAACAGAA
CTTCAGTGGATTATAGCTAGAGAATTCAAATTTTAACTCTAAAGTACAAA
AGGCTTGTTTGACTTCGGGGGTGGGGGTAGACTGCTGCTAAGAAACAAAC
TTCTATTAATAGGGAATCTTCTGGAAATTGTTCTATTAAGAACCTGGCAA
GCTTACAAATATGACAGATGGGCTGAAAATGAGGAAGTGTATGCCAGAAG
ACTTAATGTAAGAGGCTATAGGAAAACACATCCCCCATTTCCCTGGCTAT
GGATTGATGCCTGGTCAGCGTGCCTTATAAACTGCTTGAATACTTTTTGA
ATTTGGTCCATTTTCTCTGTTTCTAGGTTTGAGTCTCATAAAGGCTTCTG
GTGTCAGCTGCTGTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_f19.b1 MSMg01no495_f19.b1 CHROMAT_FILE:
MSMg01no495_f19.b1 PHD_FILE: MSMg01no495_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:25 2005
         (623 letters)



>mm_chr3_123032728_123033750
          Length = 1023

 Score = 1048 bits (542), Expect = 0.0
 Identities = 599/618 (96%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccaggcatatcgctttgactataaaaaaatcaaaatgtacatatgacaaaactat 65
           |||||||||||| || | |||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 206 gaattccaggcagattgatttgactataaaaaaatcaaaatgtatatatggcaaaactat 265

                                                                       
Query: 66  tacaaacataattaaaaggcaaaattgcagtggtttacaacatatacaagagccaaaaag 125
           |||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 266 tacaaacataattaattggcaaaattgtagtggtttacaacatatacaagagccaaaaag 325

                                                                       
Query: 126 ttagtgagtttaaaaaagagaaaactcatatttttcacatatttcaaagacatgctctca 185
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 326 ttagtgagtttaaaaaagagaaaactcatatttttaacatatttcaaagacatgctctca 385

                                                                       
Query: 186 aaatgatagatactgagaacagtttgtcttcttatcataactcctttcctttaggatgcg 245
           |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| 
Sbjct: 386 aaatgatagatactgagaacagcttgtcttcttatcataattcctttcctttaggatgca 445

                                                                       
Query: 246 ttttggggatttattgggttgtctgcttatgaaaacaaaggacttcctgccctgttttgt 305
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 446 ttttggggatttattgggttgtctgcttatgaaaacaaaggatttcctgccctgttttgt 505

                                                                       
Query: 306 tttccttagtcccaccattctatttccaacatctggaccacattggaaggaggctggacc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 506 tttccttagtcccaccattctatttccaacatctggaccacattggaaggagattggacc 565

                                                                       
Query: 366 actatgagaagccagagctgtcgctggggtcctatgaatatgtcgctacgttggattact 425
           |||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct: 566 actatgagaagccagagctgtcgctgggatcctatgaatatgttgctacattggattact 625

                                                                       
Query: 426 gcagagtgagtgctggcgggacttaagtgtttctgtgatgctgttgattttcagcgagcg 485
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gcagagtgagtgttggcgggacttaagtgtttctgtgatgctgttgattttcagcgagcg 685

                                                                       
Query: 486 gcttctgtatgtaaagatatgtatgacttggttcacagacagacatttccagggcatgtg 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gcttctgtatgtaaagatatgtatgacttggttcacagacagacatttccagggcatgtg 745

                                                                       
Query: 546 gacatatgtcagaaacagatctgacctaagtcattagcatgaatgggctcctgagctgtc 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gacatatgtcagaaacagatctgacctaagtcattagcatgaatgggctcctgagctgtc 805

                             
Query: 606 tcattgtagtatagaaaa 623
           ||||||||||||||||||
Sbjct: 806 tcattgtagtatagaaaa 823


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no495_f19.g1 MSMg01no495_f19.g1 CHROMAT_FILE:
MSMg01no495_f19.g1 PHD_FILE: MSMg01no495_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:26 2005
         (644 letters)



>mm_chr3_123233820_123234863
          Length = 1044

 Score = 1162 bits (601), Expect = 0.0
 Identities = 631/641 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ttgtagacaagactggccttgaactcatgaaagtcatcctggctttgcctcctgagtaat 63
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 935 ttgtagacaagactggccttgaactcatgaaggtcatcctggctttgcctcctgagtaat 876

                                                                       
Query: 64  gggactaaaggcatgcgccaccacacccaaccccattatctaacttatatttagtaagca 123
           ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 875 gggactaaaggcatgtgccaccacacccaaccccattatctatcttatatttagtgagca 816

                                                                       
Query: 124 ctcacaaaacaaggcgctaagctattcctttctaaagatctgtataccacaggcccaaat 183
           |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 815 ctcacaaaacaaagcgctaagctattcctttctaaagatctgtataccgcaggcccaaat 756

                                                                       
Query: 184 gagaggagaagcgctgtctgtctgtggatatgtaaatttagcatattgttatcattggtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gagaggagaagcgctgtctgtctgtggatatgtaaatttagcatattgttatcattggtt 696

                                                                       
Query: 244 aattacggaaaataaatctatttataggcatttttgctttagtgctaacctcaaaccgaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 695 aattacggaaaataaatctatttataggcatttttgctttagtgctaacctcaaaccaaa 636

                                                                       
Query: 304 atttaaaaagatcactaaacagaacttcagtggattatagctagagaattcaaattttaa 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 635 atttaaaaagatcactaaacagaacttcagtggattatagctagagaattcaaaatttaa 576

                                                                       
Query: 364 ctctaaagtacaaaaggcttgtttgacttcgggggtgggggtagactgctgctaagaaac 423
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ctccaaagtacaaaaggcttgtttgacttcgggggtgggggtagactgctgctaagaaac 516

                                                                       
Query: 424 aaacttctattaatagggaatcttctggaaattgttctattaagaacctggcaagcttac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 515 aaacttctattaatagggaatcttctggaaattgttctattaagaacctggcaagctcac 456

                                                                       
Query: 484 aaatatgacagatgggctgaaaatgaggaagtgtatgccagaagacttaatgtaagaggc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aaatatgacagatgggctgaaaatgaggaagtgtatgccagaagacttaatgtaagaggc 396

                                                                       
Query: 544 tataggaaaacacatcccccatttccctggctatggattgatgcctggtcagcgtgcctt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tataggaaaacacatcccccatttccctggctatggattgatgcctggtcagcgtgcctt 336

                                                    
Query: 604 ataaactgcttgaatactttttgaatttggtccattttctc 644
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ataaactgcttgaatactttttgaatttggtccattttctc 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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