BAC Information

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BAC

Clone NameMSMg01-495G06
Chromosome3 (Build37)
Map Location 148,544,471 - 148,544,702
singlet/doubletsinglet
Overlap geneLphn2
Upstream geneLOC100040354
Downstream geneLOC100040368, LOC668893, EG381483, LOC100040620
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495G06.T7 (MSMg01no495_g06.b1)MSMg01-495G06.TJ (MSMg01no495_g06.g1)
ACCAG572446AG572447
length931744
length of high quality
(start - end)
---235 (80 - 314)
definitionCHROMAT_FILE: MSMg01no495_g06.b1 PHD_FILE: MSMg01no495_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:28 2005CHROMAT_FILE: MSMg01no495_g06.g1 PHD_FILE: MSMg01no495_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGCCCAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGAGA
GGAGGGCGCNNGGAATNTCTGGAGTTAGGCAAAGAAAAAAAAAAGAGGGG
GNNGGGNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAANNNNNNNNN
NCCCCCCCCCCCCCCCCNAACCCCCCACANNAAAANCAACCACCCCCCCC
CCCCCCCCAAACAAAAAACAAAAAAAAACCCCCCCCCCCCCCCCCCCCNC
NNNNNNNNNNNAAAGGTTTNCACAATGGTAGGGCCNNNNACCCNNNNCCC
NAATTTTAATTTTTAAAAAATAAATTAAATTTTAAAAACCAANGGGGGAA
AATTTGGGCCCTTTAAAAGCCCCCCCTAAAGGGGGGGGGTNTCTTTCCTC
TTCCTAANCTTCAAAGGAAGNTTNNTCCTTTGTGGGGCAGACCATGGGGC
TGGAAAGGCCCCCTCTAAAAAAATTTCCAAAACGGGCNCCCCTCCCCTTC
AACGAAGGAAAAAAAAAAAATCCTTTCCCCAAACTCTAAAAAAAAAAAAT
AAAAAAAAATTAAAAAATTCCCCTCTCTCTCGTGGGGAGAGAAGAAAAAG
AGGAGAAACATTTTTCTCCGGGGGGGCGGAGTTTTTTTAACAAAGGAGGA
AGACACCGCTATAAATAGGAAGAGGGGGGTGTGGAGATAGAAGAGGGGGG
GGGAAAAAAAAAAAAACTCCTCTCCCCCCCCCCCACAAAACAAAAAGAAT
AATTCTGGTGGTTTGTGGTTGTGTGGGGGGGGGGGNNNGGGGGGAGCCCC
CCCCCCCCGACAGGGAAGGGAGNAGGNCAGGAGGGGGGGGCAGAGANAAG
AGGGGAGGGGAGAGGGACGCCGATATGCGGAGCGCTAGGGGGGGAGAGGA
GGAGAAAGACACATAGGGGGGAGGAGGGAGG
CCCCCGATGATAGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAACAATCAGTCTGGGTATATTGCAGTATTTTT
TTTTATGTCATGTGATGTTGTGAGCCATTCTGATGAAGAAATGGCCTGTG
GGAAATATTAATGTGACTCATTGTATAGTTTCTGGTAATACTGGCCTGAG
TGTGCCAGGTCCCATGCAGAGGCGGGGCGGGGGCGGGGGGCGGGGTTATG
GGAGGGAAAGAGGAATAAGACTGACATTCATACTGTGTATCAAGCAACAG
TCAGACTGATATTGTTTTTGTGTCTCAAACAACAGTCATTAAACATGTGA
GACATTAGTTGTTCAGCTTTCATACATTAACCCAAGTGTTCTAGTTGGAA
CACAGATTACACAGGGCACCTGCCAAACCAGTAGGTAAAATTAAAATATG
CCATGCAACATTTGGAAAAAGAGCTGAAAATGTAAAAGCTCTAATAACTG
AATTTATTTAAAGGACATTAATTAAGTGATAGTAAAATGTGTGTTCATTC
AATTAGAATGTTGAGCACGAGGAACCCGTTTCTTCAGTTGATGCTAAACA
CTATAACGGGGATGGAACCCAGGGAGTTTTAAGCCTATGAGAATGATGGA
CGTTGTTTTCTCCTTCACTTCTCACACATCTGCCCATTTAGAGATAACAC
TATCACTAGCATCTACTATTACACACTAATAGCCTATGTGTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_g06.g1 MSMg01no495_g06.g1 CHROMAT_FILE:
MSMg01no495_g06.g1 PHD_FILE: MSMg01no495_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:28 2005
         (235 letters)



>mm_chr3_148544364_148544996
          Length = 633

 Score =  397 bits (205), Expect = e-115
 Identities = 227/235 (96%), Gaps = 3/235 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggtatattgcagtatttttttttatgtcatgtgatgttgtgagccattctgatgaaga 60
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgggtatattgcagta--tttttttatgtcatgtgatgttgtgagccattctgatgaaga 282

                                                                       
Query: 61  aatggcctgtgggaaatattaatgtgactcattgtatagtttctggtaatactggcctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aatggcctgtgggaaatattaatgtgactcattgtatagtttctggtaatactggcctga 222

                                                                       
Query: 121 gtgtgccaggtcccatgcagaggcggggcgggggcggggggcggggttatgggagggaaa 180
           |||||||||||||||||||||||||||||||||||||||| |||||  | ||||||||||
Sbjct: 221 gtgtgccaggtcccatgcagaggcggggcgggggcggggg-cggggcgaggggagggaaa 163

                                                                  
Query: 181 gaggaataagactgacattcatactgtgtatcaagcaacagtcagactgatattg 235
           ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 162 gaggaataagactgacattcatactatgtatcaagcagcagtcagactgatattg 108


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 633
Length adjustment: 9
Effective length of query: 226
Effective length of database: 624
Effective search space:   141024
Effective search space used:   141024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)