BAC Information

Click to search

BAC

Clone NameMSMg01-495H06
Chromosome3 (Build37)
Map Location 27,059,758 - 27,220,823
singlet/doubletdoublet
Overlap geneAadacl1, LOC100040527, Tnfsf10
Upstream geneNlgn1, LOC229152, Spata16, LOC665258, Ect2
Downstream geneGhsr, Fndc3b, E030011K20Rik, Pld1, Tnik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495H06.T7 (MSMg01no495_h06.b1)MSMg01-495H06.TJ (MSMg01no495_h06.g1)
ACCAG572494AG572495
length744762
length of high quality
(start - end)
493 (80 - 572)583 (80 - 662)
definitionCHROMAT_FILE: MSMg01no495_h06.b1 PHD_FILE: MSMg01no495_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:32 2005CHROMAT_FILE: MSMg01no495_h06.g1 PHD_FILE: MSMg01no495_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,059,758 - 27,060,250)(27,220,420 - 27,220,823)
sequence
NNNCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXAATCAAAACCCGAT
CCGCGGAATTCCTAGCTTCTAGCCACATCCACTTTATGCTATGCTAGGGA
CCCAACCCAAGGCCTCATGCTTGCTAAGCAAACACTCACCTAACAAGCTA
TAGACCCAATCCATTGACTAAGTTTTCCTGCGTCTGATATTAATTAATGA
ATGCTTGTTTACCTACTTAATAACTTGGTTCTAAAGGCTGCTACTATGTG
TATAAACTGGAATAAATTACTACATAGTAAATACATCAATGTGGGTTTTT
CTTCACCTAACTTTTTTCTTTATTTTTGCCTAAGGCCTGTTTCTCCTTGT
GTTGGGATCCAGTTTGGATACAAAGTACCTCTCCCAAAAAGTCCTATGTA
TCAACTGGCTTGGTACTCAGCTGTTAGTGTTCCTGGGAGGTGACCGAGTT
GGTTTGACTCCTTAGTAAATATGGAGGCTGGTTAGAGGACGAGAGATGCC
TCTAAAGGACTACCTTGGCTCCACAGCTCAATGGCTTCCTTTCTCCTTCT
GTTTCCTGGTAGTGTTCTACAGTACCATTTCATGGAAGATCACAAGAGTG
GTACTAGGCATGCCCCTGTTCCCCTCCTGGGCCCCAGCTACTATACTTGC
CTCCTCCCCAACTGTGTCCCCACCTCTACCTCCACCCCCAGGGTGTTCCA
GCCACGGCTTCCCCTGCATGGTTCTTTCTCCAGAAAGAAGTCAC
CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCCCCCAAGCCACATAAAC
AAAGTCAGGACTAAGCCAGGCAATGAATGGGGAATGCACGAATCTAATCC
CAGCCTTCATGAGGCAGAGGTAGACAGATCTCTGAGTTCAAGGACAGCCA
GGGCTACATATAAAAACCCTGTCCAAAAAAAAGAAAGGAAAGGGAAAAAT
GAAAGAAGGAGAGAGAGAGAGAGAGAGAGAGAAGCAAGGCAGTCCTGGAG
TCCCAGTGGAGAGAAATGGAGTCTGCGGTTGGCCCCTGAGAGACTCTACC
AGGTGAGTTCCAAGTTAATGAGAGACCCTGACTCAAATAATAACTGGGAA
GAAAGGAAGCAAGAGAAAACAAAAGAAAAAGAAAAAAAAAAAGGTAGGTG
GTATCCAAGAAATGACATCAGAGGTCGTCCTCTGGCCCCACACGTATGCG
GAGATTCTTGACCAGCATGCCCTATAATAAATAAATCACCATCAGCCATA
ATTTTCATAATTATTTTCAAATAAAAGGAAAATCTACCTCACCCACTTGG
AAAAATTTCCAACTGATTGGGATTATCAAAGTCCTGCTCCATAGGACATA
CAAACTGCAGGGCCCCCGGAGACCATTGCTATCTGTGAATTTTGTACAGC
CATTTTTCTGGAAACTTTCCCTTACCATGTAGTTCCAACAAGACAGCAGG
TCGGATGTTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_h06.b1 MSMg01no495_h06.b1 CHROMAT_FILE:
MSMg01no495_h06.b1 PHD_FILE: MSMg01no495_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:32 2005
         (493 letters)



>mm_chr3_27059558_27060450
          Length = 893

 Score =  853 bits (441), Expect = 0.0
 Identities = 480/493 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactttatgctatgctagggacccaacccaaggcctcatgcttgctaagcaaacactcac 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactttatgctatgctggggacccaacccaaggcctcatgcttgctaagcaaacactcac 260

                                                                       
Query: 61  ctaacaagctatagacccaatccattgactaagttttcctgcgtctgatattaattaatg 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaacaagctataggcccaatccattgactaagttttcctgcgtctgatattaattaatg 320

                                                                       
Query: 121 aatgcttgtttacctacttaataacttggttctaaaggctgctactatgtgtataaactg 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgcttgtttacctacttactaacttggttctaaaggctgctactatgtgtataaactg 380

                                                                       
Query: 181 gaataaattactacatagtaaatacatcaatgtgggtttttcttcacctaacttttttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaataaattactacatagtaaatacatcaatgtgggtttttcttcacctaacttttttct 440

                                                                       
Query: 241 ttatttttgcctaaggcctgtttctccttgtgttgggatccagtttggatacaaagtacc 300
           | ||   ||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 tcatacatgcctaacgcctgtttctcctcgtgttgggatccagtttggatacaaagtacc 500

                                                                       
Query: 301 tctcccaaaaagtcctatgtatcaactggcttggtactcagctgttagtgttcctgggag 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctcccaaaaagtcccatgtatcaactggcttggtactcagctgttagtgttcctgggag 560

                                                                       
Query: 361 gtgaccgagttggtttgactccttagtaaatatggaggctggttagaggacgagagatgc 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 gtgaccgagttggtttgactccttagtaaatattgaggctggttagaggacgagagatgc 620

                                                                       
Query: 421 ctctaaaggactaccttggctccacagctcaatggcttcctttctccttctgtttcctgg 480
           |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 ctctgaaggactaccttggctccacagctcaatggcttcctttccccttctgtttcctgg 680

                        
Query: 481 tagtgttctacag 493
           |||||||||||||
Sbjct: 681 tagtgttctacag 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no495_h06.g1 MSMg01no495_h06.g1 CHROMAT_FILE:
MSMg01no495_h06.g1 PHD_FILE: MSMg01no495_h06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:32 2005
         (583 letters)



>mm_chr3_27219856_27220838
          Length = 983

 Score =  781 bits (404), Expect = 0.0
 Identities = 404/404 (100%)
 Strand = Plus / Minus

                                                                       
Query: 180 gagagagagagagagagagagagaagcaaggcagtcctggagtcccagtggagagaaatg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 gagagagagagagagagagagagaagcaaggcagtcctggagtcccagtggagagaaatg 909

                                                                       
Query: 240 gagtctgcggttggcccctgagagactctaccaggtgagttccaagttaatgagagaccc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 gagtctgcggttggcccctgagagactctaccaggtgagttccaagttaatgagagaccc 849

                                                                       
Query: 300 tgactcaaataataactgggaagaaaggaagcaagagaaaacaaaagaaaaagaaaaaaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 tgactcaaataataactgggaagaaaggaagcaagagaaaacaaaagaaaaagaaaaaaa 789

                                                                       
Query: 360 aaaaggtaggtggtatccaagaaatgacatcagaggtcgtcctctggccccacacgtatg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 aaaaggtaggtggtatccaagaaatgacatcagaggtcgtcctctggccccacacgtatg 729

                                                                       
Query: 420 cggagattcttgaccagcatgccctataataaataaatcaccatcagccataattttcat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 cggagattcttgaccagcatgccctataataaataaatcaccatcagccataattttcat 669

                                                                       
Query: 480 aattattttcaaataaaaggaaaatctacctcacccacttggaaaaatttccaactgatt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aattattttcaaataaaaggaaaatctacctcacccacttggaaaaatttccaactgatt 609

                                                       
Query: 540 gggattatcaaagtcctgctccataggacatacaaactgcaggg 583
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggattatcaaagtcctgctccataggacatacaaactgcaggg 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)