BAC Information

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BAC

Clone NameMSMg01-495K03
Chromosome3 (Build37)
Map Location 145,004,964 - 145,005,102
singlet/doubletsinglet
Overlap geneCol24a1
Upstream geneLOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream gene2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495K03.T7 (MSMg01no495_k03.b1)MSMg01-495K03.TJ (MSMg01no495_k03.g1)
ACCAG572631AG572632
length699728
length of high quality
(start - end)
139 (439 - 577)241 (83 - 323)
definitionCHROMAT_FILE: MSMg01no495_k03.b1 PHD_FILE: MSMg01no495_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:44 2005CHROMAT_FILE: MSMg01no495_k03.g1 PHD_FILE: MSMg01no495_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCCCCNNNGGTCATAATTGCGGCGCTAACAGAACATTATTTTTTCCGAG
CCAGANAANNCANNCNGNCTTACANGACGCAGAGAGGANGNCAAAANNCC
GCGGGCCAGAAGGCNGGNAAATTTCACCGCAAAACNCNAACANCNAAGAA
GCNCAGNAGGCCAGCCGGGAGGGACNCNAGGGAGGGCGGNANNCAGGGCA
GGAGACAGCNGCCNAANANCCGGGCAGGGCNACCCAGCNCNGGANCGGNN
CTTTTTTTGGCCATTCATGAGGACTCCACGCATTTAACATAACTACCCCC
AAAAGGCCGGGCTACCTTTTTTTTTTTTTGGACAGAGNGNNGGACNNAGG
GNNNCAAGGNATTATCTTGCACCACAAAATGAATATTCCGTCCAAGCATC
CCCCAGATCTGTTCTGTGAGTTTGAGACACACTCATGGCATGATAAAGGT
AGGTGTCCATCAAGATCTACTTACTCAACCAGACTCTCTATACCGCTATG
CCTACCTTAGACAGAAACGAGGGGCGGAAGTTTACTGATCCTCCTCAACG
AAACACTATTAAGACATGTACTTGCTCTATCCGGTAAATAATTGTCTCAT
TGACGTAGCCAGAACTAGACCCTCCCTCCCACTTTTGTTTTTATTGGTCA
TCATCAAACTCGGGGCCTTTATGTCACGGTTTATGCATTTTTAGGAAAG
AAATTAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTAGCAAAAAAAGTGCTTCTTTATGTCCTCTA
CCATCATCATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTG
TTAGGGTGTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGG
TGAGTGGTCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCA
TCTGGCTTTCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTG
TTCCTCTGTTGATTTTGTTACCCTCTTTCTTTAGGCGTGGGAGACAAGCT
CTCTTNCTTCTGAGTTTCATGTGGTTCAAAAGCCAGTTCTTCTTGTAAGG
GAAAGGCTTTTCCTCTTTTTTTTCTGGGCGTAAAATAGGTGGGTTTCTAC
CTTTTTTCTTCTTCTTCCGCCGCCTGGGTTGTCTTTTTTTGCTTTTCCCA
TTTTTTCTTCTTTCTTTTTTTTCCCCCCTCATTATCTCTTTTGCCTGTCT
CTGTTTTTCCTGTCTTTCTTATTCATTCTTTCCGTTTGCCTCTGTTTTCT
TTTTTTGTAATTTAAATACCTCCATTTCTCCCACTTTTCTCCCCTTCTAT
CTCCCTTTTTTTCCTTGTTTTCCCTCCCTTCGTTTCCCCGAATCCCCCCA
TCTTTTCTCTCCTCTTTTTTCTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_k03.b1 MSMg01no495_k03.b1 CHROMAT_FILE:
MSMg01no495_k03.b1 PHD_FILE: MSMg01no495_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:44 2005
         (139 letters)



>mm_chr3_145004764_145005302
          Length = 539

 Score =  230 bits (119), Expect = 2e-65
 Identities = 134/139 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgataaaggtaggtgtccatcaagatctacttactcaaccagactctctataccgcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgataaaggtaggtgtccatcaagatctacttactcaaccagactctctataccgcta 260

                                                                       
Query: 61  tgcctaccttagacagaaacgaggggcggaagtttactgatcctcctcaacgaaacacta 120
           || ||||||||||||||||||||||||||||||||||||||||||||  | |||| ||||
Sbjct: 261 tgtctaccttagacagaaacgaggggcggaagtttactgatcctccttgatgaaatacta 320

                              
Query: 121 ttaagacatgtacttgctc 139
           |||||||||||||||||||
Sbjct: 321 ttaagacatgtacttgctc 339


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 539
Length adjustment: 8
Effective length of query: 131
Effective length of database: 531
Effective search space:    69561
Effective search space used:    69561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)