BAC Information

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BAC

Clone NameMSMg01-495K07
Chromosome3 (Build37)
Map Location 70,022,706 - 70,022,931
singlet/doubletsinglet
Overlap genenone
Upstream geneArl14, Ppm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414
Downstream geneLOC100041384, LOC625868, LOC670542, EG625901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495K07.T7 (MSMg01no495_k07.b1)MSMg01-495K07.TJ (MSMg01no495_k07.g1)
ACCAG572638AG572639
length704735
length of high quality
(start - end)
---226 (375 - 600)
definitionCHROMAT_FILE: MSMg01no495_k07.b1 PHD_FILE: MSMg01no495_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:45 2005CHROMAT_FILE: MSMg01no495_k07.g1 PHD_FILE: MSMg01no495_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCGAGNNANATCAAAAATTGCGGCCGCTAAACGACTATTATAGTTTTTT
GACCGAGAGGAANCACACGGCTTTGACANNCAGCGGGGGCANGCNNCCAG
GAACCCAGAAACACAGNNNNCANNNCACCACGCCCACACAACCANGAANA
ACNCAANCACNNAAACCGGGAGCCAAGAAAAAGCNNNCNGCCNNGAACAA
AAGGCNGNGNGCNNNCANNGAAGAAGACNNNCANNAAAANGAAAACNGNA
CGGGCNGTTTTTTGNCAACNNGACACAGGCGGGAGNNANCACAGNNANCA
CAGCNNCAANGGGGGAAANGCCNCTTTTTTTTCTAGCNGNAAGGCANNNN
CGCAANNAGGGANCAAGGGGGAAGGCCCCCCCGNGGGNGGNGCCANCNCN
GGGCNGGNAACCNGGGNNCNANAGGAGAGCACGCCCACCAAGCCAGGGGA
AGCAAGCCAGCAAAGAACANCCCNCCAGGGAANCNGCANCAGCGGCGGCN
NNCAGACCNGCNNGAGNNCCAGNCCGGACNNCCNNGGNGACGAACAGCAG
CANAGAAGNGCAAGCNGAAAAAACCCAAACCCCCCCCACNAGCNNCAAAG
ACAAGAAGNNNGNGCAGGAANAGAAACCCNGACCAAAACAAAAACGACGG
CCCAAACCAAAAAGAAAGAAAGGACCCAGGCCAAAGAGCACCGAAAAGCC
CAAG
NNCCGATGAAGTGGGTAGCCTGGNGGCCGCCTGGCTTTCCCATCTAGGNG
AACNATAGAAGGTTTCCCACATTAGGGAGATGGNAAAAGNTATTCTTTAG
TCTTTAAAGGAATTTAAAAAGATGTCATTATTTGGTGGCTAGACTGAGGC
TTTATGTTCTTTCCTAACTTCCAAACTACTTTTATTTATTCCCTCCAAAC
TCCAAGCATTTCCTGTAGTTTAAAAATAAAAATGACAGATGGCTGAAGAA
ATATTTTAAAATATACAAATGCGAATATTCTGGGTTATCTTTCAATAGTG
CCTAGGGNTTTTTTTTTCTTTCATTATAGNAGGAAATTATAGTTTCCTAT
CTTATGACTTTTATAAAGGTTTACATATTTGTGAATAATCTTGGAGCATT
TTATTTTTCTGCAAAAGCATGCGCAGTTTTTGTTTGGTGGGTAAAACGTC
TTGTATCTGACACCATCCTTCCCAGCTGCTCTGTTTTAGGGCTGAGCATT
GTGATGGAGTCAGATCTACCACCAGGAAATATCTCCTTAGAGAGGCCCTT
GGTCTTGCAAAGATCATATGTCCCAGTACAGGGGAATGCCAAGGCCAGGA
AGTGGGAGTGGGTGGTTTGTCTTTCCTTCTCCTTGTTCTGCGCCCGCTTT
TTTTTTTTTTTTTTTTCACTTTCCCTTTTTGCGTTTTCCTTCGCTTTGTC
GGCCTTCCGTCCCTTATCCCCCTCTTTTTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_k07.g1 MSMg01no495_k07.g1 CHROMAT_FILE:
MSMg01no495_k07.g1 PHD_FILE: MSMg01no495_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:45 2005
         (226 letters)



>mm_chr3_70022506_70023131
          Length = 626

 Score =  398 bits (206), Expect = e-115
 Identities = 221/226 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatttgtgaataatcttggagcattttatttttctgcaaaagcatgcgcagtttttgtt 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 201 atatttgtgaataatcttggagcattttatttttctgcaaaagcatgtacagtttttgtt 260

                                                                       
Query: 61  tggtgggtaaaacgtcttgtatctgacaccatccttcccagctgctctgttttagggctg 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtggctaaaacgtcttgtatctgacaccatccttcccagctgctctgttttagggctg 320

                                                                       
Query: 121 agcattgtgatggagtcagatctaccaccaggaaatatctccttagagaggcccttggtc 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 agcattgtgatggagtcagatctaccaccacgaaatatctccttagagaggcccttggtc 380

                                                         
Query: 181 ttgcaaagatcatatgtcccagtacaggggaatgccaaggccagga 226
           ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 ttgcaaagatcatatgtcccagtacaggggaatgccagggccagga 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)