Query= MSMg01no496_d20.b1 MSMg01no496_d20.b1 CHROMAT_FILE:
MSMg01no496_d20.b1 PHD_FILE: MSMg01no496_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:30 2005
(625 letters)
>mm_chr3_56535216_56536244
Length = 1029
Score = 787 bits (407), Expect = 0.0
Identities = 531/629 (84%), Gaps = 88/629 (13%)
Strand = Plus / Minus
Query: 85 tattttgctcataggaagtactcatcagtgcaaccgacaagctgccatcacatatatatg 144
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1029 tattttgctcataggaagtactcaccagtgcaaccgacaagctgccatcacatatatatg 970
Query: 145 ttaatgtagaatgattgacaggtgataaaatgcatgcataagcctatataaagataaaaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 ttaatgtagaatgattgacaggtgataaaatgcatgcataagcctatataaagataaaaa 910
Query: 205 tccggtatatatgtatatatagtacatagtcatatatttacatatagatgtatacagtat 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 tccggtatatatgtatatatagtacatagtcatatatttacatatagatgtatacagtat 850
Query: 265 ata--------------------------------------------------------- 267
|||
Sbjct: 849 atacatatacacatacacatacacatacacatacacatacacatacacatacacatacac 790
Query: 268 ---------------------------tatatacatgcatgcatgtgtgtatacataagt 300
|||||||||||||||||||||||||||||||||
Sbjct: 789 atacacatatacatatacatctatggctatatacatgcatgcatgtgtgtatacataagt 730
Query: 301 atatatacacattcttagctcagtggaagcttagatgcttctcatttattaaatcgatta 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 729 atatatacacattcttagctcagtggaagcttagatgcttttcatttattaaatcgatta 670
Query: 361 acaacttccttaaatttggcaattgttatgcaatcttaaaggataagtatggtccaacaa 420
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 669 acaacttccttaaatttggcaattgttatgcaattttaaagaataagtatggtccaacaa 610
Query: 421 atgatttgtatcatgaaaaacattccactctaagttttgaatgatccatgtttctcccca 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 609 atgatttgtatcatgaaaaacattccactctaagttttgaatgatccaagtttctcccca 550
Query: 481 tattaaaaaa---ta-taaacaaaccatcagggtagagtggtgcctcagtcttggaatcc 536
|||||||||| || |||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 549 tattaaaaaaaaataataaacaaaccatcagggtagagtggtgcctcagtctcggcatcc 490
Query: 537 tggagacagaggaaggtgtatttctatgaatcccagggcagcatgacctacatagcgagt 596
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 489 tggagacagaggaaggtgtatttctatgaatcccaggccagcatgacctacatagcaagt 430
Query: 597 ttcaggccagtcaatgctatgtaatgaaa 625
||||||| |||||||||||||||||||||
Sbjct: 429 ttcaggctagtcaatgctatgtaatgaaa 401
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1029
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1019
Effective search space: 626685
Effective search space used: 626685
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_d20.g1 MSMg01no496_d20.g1 CHROMAT_FILE:
MSMg01no496_d20.g1 PHD_FILE: MSMg01no496_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:30 2005
(607 letters)
>mm_chr3_56409166_56410172
Length = 1007
Score = 1135 bits (587), Expect = 0.0
Identities = 602/607 (99%)
Strand = Plus / Plus
Query: 1 cagagagtataatttaaaatatttatttatttgtttatttgtttatttactttatatgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagagtataatttaaaatatttatttatttgtttatttgtttatttactttatatgct 260
Query: 61 tgtgtattttcctgtatgagtttgtgcgcatggaagccataggttgtcaaatttcttgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtattttcctgtatgagtttgtgcgcatggaagccataggttgtcaaatttcttgga 320
Query: 121 aatgaagtttcagacttatgtgcgttactcaaagtggaaattgggaaatgaacctggatc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 aatgaagtttcagacttatgtgcgttactcaaagtggaaattgggaaatgaacctgaatc 380
Query: 181 atctacagaaatagttagcactcctaaccactaaagaatctgtgctagctaggaatttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctacagaaatagttagcactcctaaccactaaagaatctgtgctagctaggaatttgt 440
Query: 241 gccatctttacagaagccaaaatgatttcaaaagcaaggaacctaaattgaaaaaaatgg 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccacctttacagaagccaaaatgatttcaaaagcaaggaacctaaattgaaaaaaatgg 500
Query: 301 ctctatactatccagttatagagcattttcttaaatggtgactggttggggagggcccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctatactatccagttatagagcattttcttaaatggtgactggttggggagggcccaa 560
Query: 361 cctattatggataattatattcctgggctggtgatcctaggtcctataagaaagcaggct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctattatggataattatattcctgggctggtgatcctaggtcctataagaaagcaggct 620
Query: 421 gagcaagtcataagaagcaaacaattaagtgataagcacttctacatgacctttgtatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 gagcaagtcataagaagcaaacaattaagtgataagcacttctacatgacctttgcatca 680
Query: 481 gctcctgcctctaggttcctgcatcattttagttcctgccctgacttctttccatgatga 540
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 gctcctgcctctaggttcctgcatcattttagttcctgccctgacttcttaacatgatga 740
Query: 541 acagttgtggaagaatgatgacccagcctgactccatcttaagattagaagctgctttgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acagttgtggaagaatgatgacccagcctgactccatcttaagattagaagctgctttgt 800
Query: 601 tacaagg 607
|||||||
Sbjct: 801 tacaagg 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
