NNNNAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCAGTTACTAAATGTCAGCTGGCAAAATTGGCAAATG
ATATACAATGAATATATTAACCAATAAAGTATAGATAGATAAAACAGTGC
AGCTTTTAGCTAATTTTATATTAATTAAAATAAAAAATTTTATATTATCA
GCTATGAATCTTTTTTTTTACTTTGCCTTATATCATTATGGTCTGGGTAA
CTNTANAAANTNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGNGNNNNNNN
AAAAAAAAAAAANGAGGGNGGGNGGGGGGGGGANNAAAAAANAAAAAAAA
AAAAAAAAAAAAAAAAAGGGAAAGGAGAAGGAGGGGGGGGGGGGGGGNGG
GNAGGGGGGAAGGAGAAAAGGAGAAAAGAAGAAAAAGAAAGGGAGGGGAG
GGAAGGGGAGGAGANNNAAAAGGAAAGGGGGGAGAAGAGGGAGGGGAGAA
ANGGGAGAGAAAGGAGAAAAGGAGAAGGGAAAGAAGGAAAAGGAAAAGAA
GGAAGAAAGNGAGAGAGGGGGGGGAGGGGAGAGGGAAAGGAAAGAGGGGG
GGGGAAAGGGAAGGAGAGAGAAAGAGGGGGAAAAGANAGAGGAGAGAGAA
ACCGGGGGAGAAAAGGGAGAAAGGGGGGGAAGGAAAAAGAGGGGAGAAGA
AAGAGGAGGAGAAAAAGGANGAAAAGAGGAAGGGGGANGGGGGGGGGGGG
GGGGGGAAGTTTAAAGAGGGGGAGNGAGAGGAGGGGAGAGAGGNAGG

AGAGGGTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTGTGGACTATGA
TCTGTGCTAAGTGATTAAAATTATGATATTACTTGATGTTTTTCAAAAGA
GCAGCAATAGATCAACATGCCTGCCCTTCTCCCACACCGCACATCCTGCC
TGTCTCCAGAAGGTTGGCCATAGGGACACAGGTGAGAATCTTGCCCCAAT
ACCTACACCAACTGGGACCCCAACAGAGCAAGAGATAAACATGGGATTCT
ATCCTGCTCTGCCTGAGCCCCATAGTCCTTCCAGTCCACACCTCCATATT
CAACTGGGTAGATCCTTCCCCCAGACCTCAAACCCTGTCTATCTCTAAGG
AGATCCACCCTAAACAGGAACACAGAAGGTCTTCCCTAACCAAGGACACA
GAGGCCTTCTCATCAGAGAAAACCAGACGGCAAGTGGCAAGCAAAGAACA
TAATTGACAGAACCCAGTGCTGTTTGGCATAATCAGAACCCAGTTCTCCC
ACCACAGCAAGCCCTGGATATGCTGGCCACTTAAAAAGCAAGATTCTGAT
CTAACAACTCATCTCATGAACATGTTAGACTCCTTTAAGGAGGACATAAC
TCCCTTTAAAAAAAATACAGGATAACAGGAAAATAAGTAGAAGCCCTTAA
AGAAAAAAAAATAAATGAATTCCTTAAAGAAATACAGGAAAATACN

Query= MSMg01no496_e03.g1 MSMg01no496_e03.g1 CHROMAT_FILE:
MSMg01no496_e03.g1 PHD_FILE: MSMg01no496_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:32 2005
         (663 letters)



>mm_chr3_80278103_80279164
          Length = 1062

 Score = 1156 bits (598), Expect = 0.0
 Identities = 648/666 (97%), Gaps = 6/666 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcttgtggactatgatctgtgctaagtgattaaaattatgatattacttgatgttttt 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tttcttgtggactatgatctgtgctaagtgattaaaattacgatattacttgatgttttt 260

                                                                       
Query: 61  caaaagagcagcaatagatcaacatgcctgcccttctcccacaccgcacatcctgcctgt 120
           ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 261 caaaagagcagcaatagatcaacatgcctgcccctctcccgcaccgcacatcctgcctgt 320

                                                                       
Query: 121 ctccagaaggttggccatagggacacaggtgagaatcttgccccaatacctacaccaact 180
           |||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 321 ctccagaatgttggccatagggacacaggtgagaatcttgccccagtaccgacaccaact 380

                                                                       
Query: 181 gggaccccaacagagcaagagataaacatgggattctatcctgctctgcctgagccccat 240
           ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 gggaccccaacagagcaggagataaacatgggat-ctatcctgctctgcctgagccccat 439

                                                                       
Query: 241 agtccttccagtccacacctccatattcaactgggtagatccttcccccagacctcaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 440 agtccttccagtccacacctccatattcaactgggtagatccttcccccagacttcaaac 499

                                                                       
Query: 301 cctgtctatctctaaggagatccaccctaaacaggaacacagaaggtcttccctaaccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 500 cctgtctatctctaaggagatccaccctaaacaggaacacagaaggtctgccctaaccaa 559

                                                                       
Query: 361 ggacacagaggccttctcatcagagaaaaccagacggcaagtggcaagcaaagaacataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggacacagaggccttctcatcagagaaaaccagacggcaagtggcaagcaaagaacataa 619

                                                                       
Query: 421 ttgacagaacccagtgctgtttggcataatcagaacccagttctcccaccacagcaagcc 480
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 620 ttgacagaacccagtgctgtttggcataatcagaacccagttctcctaccacagcaagcc 679

                                                                       
Query: 481 ctggatatgctggc-cacttaaaaagcaagattctgatctaacaactcatctcatgaaca 539
           ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctggatacgctggcacacttaaaaagcaagattctgatctaacaactcatctcatgaaca 739

                                                                       
Query: 540 tgttagactcctttaaggaggacataactccctttaaaaaaaatacaggataacaggaaa 599
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 740 tgttagactcctttaaggaggacataactccctttaaaaaaa-tacaggataacaggcaa 798

                                                                       
Query: 600 ataagtagaagcccttaaagaaaaaaaaa---taaatgaattccttaaagaaatacagga 656
           |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||
Sbjct: 799 ataagtagaagcccttaaagaaaaaaaaaaaataaatgaattccttaaagaaatacagga 858

                 
Query: 657 aaatac 662
           ||||||
Sbjct: 859 aaatac 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1062
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1052
Effective search space:   686956
Effective search space used:   686956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)