BAC Information

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BAC

Clone NameMSMg01-496E24
Chromosome3 (Build37)
Map Location 41,121,007 - 41,310,092
singlet/doubletdoublet
Overlap geneEG666004, Ppia-ps3_337.1
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneLOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031, LOC100039204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496E24.T7 (MSMg01no496_e24.b1)MSMg01-496E24.TJ (MSMg01no496_e24.g1)
ACCAG573148AG573149
length795784
length of high quality
(start - end)		524 (48 - 571)553 (77 - 629)
definitionCHROMAT_FILE: MSMg01no496_e24.b1 PHD_FILE: MSMg01no496_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:36 2005CHROMAT_FILE: MSMg01no496_e24.g1 PHD_FILE: MSMg01no496_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,309,573 - 41,310,092)(41,121,007 - 41,121,559)
sequence
NCCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTCTATCCCAAGGCAGATCTTGACGTTATAATCCTTCCTCAG
CCACACTAGGAATGTCACCAGCCCAGCGGATGCAAATCATCTTCTGTCAC
TCTTATTGTTCCATCTGTCACATCCATAAACCAACATTTTAACCCTGACG
GCCAGGTGGGTTCTATTACGTGTTTTAGAAACTGCCGCCCATCTGGGCTC
TCACAGTGTCTGAGCACCCTGACATGGTCCCCACAGCCCCTTTTGCCAGC
ACTGGGCCCACCTTACATAATCTGAGATTTAGCTCCCAGATAATCGGATT
TTTATTTTTACCCAATATCTTTCAACTAACTCATTGATGATCCATTTACT
TTAGATGTCAGAGAAGCTCTTTGCTCTGGAAATAGAAGAGACTCAAGCAA
AATTTGGTCAGCATGCTTCACTTGCCCTGAAGCCATGTTTAATTTGTAGG
TGAATAAATTTGATGTTAGCAGGTTCAGTTCCTGTCTCAATGACTACAAC
TTGTTTGTAATCTCATCTGAGAAAGAGACACTTACAGATAGCTTTCAAGT
AGTCGTCTTATCGTGGAGCTTACAAGATGATGGGCAGTTTAAGCGAATAG
NTATTAGTGGTAAAATCTCAAGAGCTACGTCCAGACTCTTCATAAAAGCT
CAAGTCTCCAGCACGAGTAATATGAGCTTTGCTTATCAAGATCTTGCCCC
ACAGCTTTCAGCATGGTACATTTTTTTTTGTAAAGTTATTTAAGA

NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTGCACCCAGCACTGCAGCTCTG
GACTGACCTCAGGATGCGGGCTCAGGATCATTTATGTTTTCTGCACTGGA
GCCCACAGTGGAAGTATCCAGAGTCCAGTCTTTTCCCTGTTACTGAGGCA
CAGACCAGCAGTGGGAAAGCAATGCTACTTTGAGGGGGAGTGGGACCCCA
GCTAGAGCCCTGCATTTGTCTTTCTTATTACTGCTGTAATCAATCACCAT
GACCCCAGTGGCTCATGACAGCTCAAATGTACACCCCTAGCAGTTCCAGC
CATCAGGAATACGAAAGGGTCTCACTGGGCTGAAGCCAAGAAGGTGTCAG
CAAGATTTCCTCCTTTTAGGAGTCTCTACGGAGGAACTGTCTTTCCTGCT
TTGAGAGGCCACCTGCATTTCTTGGCTTATGGTGCCTCCTTCCTCTTTCA
AAGGCTGCAGCATAGCATCTTCCTGTGGTGCTCTCACTGGGATCCTCACT
CCCTTTCTCTCCCTCCTTTCCAAGGACCCCTGTGACTACACTGGACCACC
TGGATAATCCAAGATGATCTCCCATCTCCAACTTAGTCCTGTCTGCATGG
TCCCCTTTGCCAGATAAAGTGGCTGGCTCACTTACAGGATCTGAAGATAN
GGTGCANGCATCTTTTGGGTGCTTTATCTGGGTAGGACAGTTATACAGTG
GGTATGGGATCAGAGCACATTCTATCTGGGGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_e24.b1 MSMg01no496_e24.b1 CHROMAT_FILE:
MSMg01no496_e24.b1 PHD_FILE: MSMg01no496_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:36 2005
         (524 letters)



>mm_chr3_41309369_41310292
          Length = 924

 Score =  982 bits (508), Expect = 0.0
 Identities = 517/520 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattctatcccaaggcagatcttgacgttataatccttcctcagccacactagga 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gaattcattctatagcaaggcagatcttgacgttataatccttcctcagccacactagga 665

                                                                       
Query: 65  atgtcaccagcccagcggatgcaaatcatcttctgtcactcttattgttccatctgtcac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 atgtcaccagcccagcggatgcaaatcatcttctgtcactcttattgttccatctgtcac 605

                                                                       
Query: 125 atccataaaccaacattttaaccctgacggccaggtgggttctattacgtgttttagaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atccataaaccaacattttaaccctgacggccaggtgggttctattacgtgttttagaaa 545

                                                                       
Query: 185 ctgccgcccatctgggctctcacagtgtctgagcaccctgacatggtccccacagcccct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ctgccgcccatctgggctctcacagtgtctgagcaccctgacatggtccccacagcccct 485

                                                                       
Query: 245 tttgccagcactgggcccaccttacataatctgagatttagctcccagataatcggattt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tttgccagcactgggcccaccttacataatctgagatttagctcccagataatcggattt 425

                                                                       
Query: 305 ttatttttacccaatatctttcaactaactcattgatgatccatttactttagatgtcag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttatttttacccaatatctttcaactaactcattgatgatccatttactttagatgtcag 365

                                                                       
Query: 365 agaagctctttgctctggaaatagaagagactcaagcaaaatttggtcagcatgcttcac 424
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agaagctctttgttctggaaatagaagagactcaagcaaaatttggtcagcatgcttcac 305

                                                                       
Query: 425 ttgccctgaagccatgtttaatttgtaggtgaataaatttgatgttagcaggttcagttc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttgccctgaagccatgtttaatttgtaggtgaataaatttgatgttagcaggttcagttc 245

                                                   
Query: 485 ctgtctcaatgactacaacttgtttgtaatctcatctgag 524
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctgtctcaatgactacaacttgtttgtaatctcatctgag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no496_e24.g1 MSMg01no496_e24.g1 CHROMAT_FILE:
MSMg01no496_e24.g1 PHD_FILE: MSMg01no496_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:36 2005
         (553 letters)



>mm_chr3_41120807_41121759
          Length = 953

 Score = 1007 bits (521), Expect = 0.0
 Identities = 545/553 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgcacccagcactgcagctctggactgacctcaggatgcgggctcaggatcatttatg 60
           ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 201 cctgcacccagaactgcagctctggactgacctcaggatgggggttcaggatcatttatg 260

                                                                       
Query: 61  ttttctgcactggagcccacagtggaagtatccagagtccagtcttttccctgttactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttctgcactggagcccacagtggaagtatccagagtccagtcttttccctgttactga 320

                                                                       
Query: 121 ggcacagaccagcagtgggaaagcaatgctactttgagggggagtgggaccccagctaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcacagaccagcagtgggaaagcaatgctactttgagggggagtgggaccccagctaga 380

                                                                       
Query: 181 gccctgcatttgtctttcttattactgctgtaatcaatcaccatgaccccagtggctcat 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 381 gccctgcatttgtctttcttattactgctgtaatcaatcaccatgacctcagtggctcac 440

                                                                       
Query: 241 gacagctcaaatgtacacccctagcagttccagccatcaggaatacgaaagggtctcact 300
           |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacagcacaaatgcacacccctagcagttccagccatcaggaatacgaaagggtctcact 500

                                                                       
Query: 301 gggctgaagccaagaaggtgtcagcaagatttcctccttttaggagtctctacggaggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggctgaagccaagaaggtgtcagcaagatttcctccttttaggagtctctacggaggaa 560

                                                                       
Query: 361 ctgtctttcctgctttgagaggccacctgcatttcttggcttatggtgcctccttcctct 420
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 ctgtctttcctgctttgagaggccacctgcatttcttggcttacggtgcctccttcctct 620

                                                                       
Query: 421 ttcaaaggctgcagcatagcatcttcctgtggtgctctcactgggatcctcactcccttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcaaaggctgcagcatagcatcttcctgtggtgctctcactgggatcctcactcccttt 680

                                                                       
Query: 481 ctctccctcctttccaaggacccctgtgactacactggaccacctggataatccaagatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctccctcctttccaaggacccctgtgactacactggaccacctggataatccaagatg 740

                        
Query: 541 atctcccatctcc 553
           |||||||||||||
Sbjct: 741 atctcccatctcc 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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