BAC Information

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BAC

Clone NameMSMg01-496G11
Chromosome3 (Build37)
Map Location 111,723,687 - 111,724,085
singlet/doubletsinglet
Overlap geneLOC625585
Upstream geneLOC100043190, LOC668712
Downstream geneEG229746, LOC668717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496G11.T7 (MSMg01no496_g11.b1)MSMg01-496G11.TJ (MSMg01no496_g11.g1)
ACCAG573218AG573219
length1,005728
length of high quality
(start - end)
---399 (330 - 728)
definitionCHROMAT_FILE: MSMg01no496_g11.b1 PHD_FILE: MSMg01no496_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:43 2005CHROMAT_FILE: MSMg01no496_g11.g1 PHD_FILE: MSMg01no496_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCCTGTCTAATAAGTGTGGGGTGGAGGAGACTCNCTTTTTTTCCTTAT
GTAGGAGGAGGGGGAGCGTTTGTTTTTTCCTGTATACACCACCTTGCACG
AACAAATAGACCCATGCAGTTGTGTTTTCAGGTCGCGGAGGGCTGTATGC
TTTCGCTTTTTGTTCGCTTGCCGCTGTATGATCAAGCGATTGTAGCTGTA
GACTACCTTGCACTCATCCCTTTATTCGAGTCCAAATAAGTGTCTTCTCA
TCCGGTCATCAAGCCCAAGTTTTTTGCCCTCTCTTACCCTACGGCGGCGA
CGGGGCCACCGGCACGAAACAAATTGATGTGGGTCGAGAATCTAAAAGTA
AATTACAATTGCGGATTGTAAGACGCAACGCGCCGCATTTCCTGTTAAGC
AATTAACAGAGGCGCGGCACGTAGCTAGAAAATGAATTATCATTCCTTTC
GGCCCGTTTGTTCTTAAGTCAACATTGTTGCCCTAATACACACTTACCTA
ACTGATATAGCGCGCGCTCGGCCCTTTTTTTTCAGCATCTACACCTCCTT
GCCCCCCGGGATATTTTTATTCGCAGTCAAGATGCTGTTTGTAGAGTCGC
CGGCGTGGGAGTGACAAGTCATGAAAACTAAAATCCATTTTCTGATCACA
CTCGATACTATTATATATGAGGAGCGCAAGCGCAATATGTTGTTTAATAG
CAATGAATATGCGGCACGCCGGCGAAGGGTAGTTTAGTCGTTTTCACTAT
CTAAAACCATCACACCCACTAACTAAAAATTAAAAACTACCCGCGATAGT
TGGTGTAGCAACGTAGACATAACCGCCGCCCTAAATATTATTTCCCCCTC
CGCCCCCCCTGTTCTTTATTGATCCGGACCGTCTATATCTTACTACCTCT
TTCACCGCTAACATGTTAGAAACTAAGTGCGTCATTTGATGTCCGCTTGC
GCCACTAACTAATTCCACCCCCGATATCATACACACCCACTGCCTTTTTC
GTTTN
GGAAGGGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXNCTTCAAAATACT
TTAGGTGACACTATAGTTTGCATCCACAGGATTCTATGCTAAAGTCAATC
ATCAAAGCTTGGTTTTATGGGACCTTGCAAATGAGTTAGTGGAAAAAGCA
AGAACTACATGGAGATGAATATTCTCAGGTGAGTACATGGCTTTGGAGGA
TACTGGCCTGAGTGTCCCAGAGTTACTTGCTGAAGTATGGAAGTTGTTGG
TTTTCTGGTTTTGTGTTTGTTTGTTTGTTTTTTCAGCTTAGGCTAAGGCA
TTGGACCTAGAACTCATGGCTTGATANTGAAATTGAAGATTATTTGAAAA
GTAAAGTACTTCTGAGAATGAGAGTAGGCTTGTGAGCTGCAGCATAAGGA
AAGGTTCCAAAAACTGTCATGAGCCTTCATAGTACATTGACTTACCACCT
CCCACTCCCATGTATGTATGTGGGAAGCTTTTCGTGAGAAGGATGCATTG
TTGAATGGATCCCAGTTAGGAAATTGTTTTGACAACTGCATTTTTCATGT
TCTGCTCTTGATGCTGCTGGTTTGGTCACTAGACTACTTTCATATAGGAC
CTGATCTGGGAATCTGGGAATCCCAGCTACTACATGAAAATCAGTGTTAA
TGGAAGCTCTCCTGTAATGTAAACTGAGAAGATTGATATAAATGATCTCC
TTGGATATCTGGAAAGCAAAAGTAGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_g11.g1 MSMg01no496_g11.g1 CHROMAT_FILE:
MSMg01no496_g11.g1 PHD_FILE: MSMg01no496_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:43 2005
         (399 letters)



>mm_chr3_111723487_111724285
          Length = 799

 Score =  756 bits (391), Expect = 0.0
 Identities = 397/399 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattgaagattatttgaaaagtaaagtacttctgagaatgagagtaggcttgtgagctg 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaattgaagattatttgaaaagaaaagtacttctgagaatgagagtaggcttgtgagctg 260

                                                                       
Query: 61  cagcataaggaaaggttccaaaaactgtcatgagccttcatagtacattgacttaccacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcataaggaaaggttccaaaaactgtcatgagccttcatagtacattgacttaccacc 320

                                                                       
Query: 121 tcccactcccatgtatgtatgtgggaagcttttcgtgagaaggatgcattgttgaatgga 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccactcccatgtatgtatgtggcaagcttttcgtgagaaggatgcattgttgaatgga 380

                                                                       
Query: 181 tcccagttaggaaattgttttgacaactgcatttttcatgttctgctcttgatgctgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccagttaggaaattgttttgacaactgcatttttcatgttctgctcttgatgctgctg 440

                                                                       
Query: 241 gtttggtcactagactactttcatataggacctgatctgggaatctgggaatcccagcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttggtcactagactactttcatataggacctgatctgggaatctgggaatcccagcta 500

                                                                       
Query: 301 ctacatgaaaatcagtgttaatggaagctctcctgtaatgtaaactgagaagattgatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctacatgaaaatcagtgttaatggaagctctcctgtaatgtaaactgagaagattgatat 560

                                                  
Query: 361 aaatgatctccttggatatctggaaagcaaaagtagctg 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatgatctccttggatatctggaaagcaaaagtagctg 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)