BAC Information

Click to search

BAC

Clone NameMSMg01-496G16
Chromosome3 (Build37)
Map Location 127,603,183 - 127,603,571
singlet/doubletsinglet
Overlap genenone
Upstream geneAnk2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik
Downstream geneLOC100043382, EG668828, LOC100043393
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496G16.T7 (MSMg01no496_g16.b1)MSMg01-496G16.TJ (MSMg01no496_g16.g1)
ACCAG573228AG573229
length791791
length of high quality
(start - end)
567 (73 - 639)392 (70 - 461)
definitionCHROMAT_FILE: MSMg01no496_g16.b1 PHD_FILE: MSMg01no496_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:44 2005CHROMAT_FILE: MSMg01no496_g16.g1 PHD_FILE: MSMg01no496_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGG
AATTCTCACCTTCGGAATAACGAATGGCAGAGAAGCACTTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGTGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACTTTTAAGATCCAGCAATACCTCTTCTGAGC
ATATATCCAGAAGATGCCCCAACCGATAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCCCACTTATAATAGCCAGAAGCTGGAAAGAACCTAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAA
GAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACC
TAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAG
AAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTAGATTTGGGAAC
AAAAATCCCCGGAAAGGAGTTCCTAGACTAAGTTTGTAGCT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTGCCCGAGAAATTCCTGCCTTGACTTCCTTCAATGGTTCGC
TGTAACCTGTAAGGCGGAATAAACCCTTTCCTCCACAAGCTGCTCTTAGT
CATGCTGCAACCATAGCAACAGAAAGCAAAACAGAAGAGCGGGACAGGGT
TGCAGATTAACCATCCCAGAAAGCCAGTTGCTTGCAAAGACAATTTGCCC
TACTCTTGGAATTCATTAAAACCCTCTGTTCGCTTTCTTTCCTCTGGTGT
GTTACCTTTGCTCAGTGTTTTGTTGATTTCTTTCCAGGCAGTAGAAATGT
TGTCATTTTGGGTGGGGTTGGGGGAGGGAAAAGCATGAGAAAACTATCAA
ACTCAAGGTGAACAGACAGGGAGGGGATGGGNGAGAGAAGGGGGGCAGAA
GAGGAGAGGAGNGGNGNNNNNNGNNNGGGNGGNGGGGAAAGAANGGAAGG
GGGAAAAAAAGGAAAGAAAAGAAAAGGGAGGAAAAAAAAAGAAGGGAGAA
GAAGGGAGAAACTAAAACAGAAAGAAAGAGCAAAACACAGCAGAAAAAGG
AACGAGGCCCCCTGAGCGAGACACGCAACCACCATAAAAGCGGCCCGGGG
CACCACGTATGTTTTTATCTTACATAAATCCCCCCTGTTTTTTTCTTTCA
TTTCCCCCCCTCATCTATTCTCCTATCCTTCTTCGTTTCTACTCCTATTT
TTACTTTGTTTTTTTCTGTTTTTTTCCCTCTTCTTCCTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_g16.g1 MSMg01no496_g16.g1 CHROMAT_FILE:
MSMg01no496_g16.g1 PHD_FILE: MSMg01no496_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:44 2005
         (392 letters)



>mm_chr3_127602983_127603771
          Length = 789

 Score =  567 bits (293), Expect = e-166
 Identities = 368/395 (93%), Gaps = 9/395 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcctgccttgacttccttcaatggttcgctgtaacctgtaaggcggaataaacccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| 
Sbjct: 201 attcctgccttgacttccttcaatggttcgctgtaacctgtaaggtgaaataaacccttc 260

                                                                       
Query: 61  cctccacaagctgctcttagtcatgctgcaaccatagcaacagaaagcaaaacagaagag 120
           |||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 261 cctccacaagctgctcttagtcgtgcttccaccatagcaacagaaagcaaaacagaagag 320

                                                                       
Query: 121 cgggacagggttgcagattaaccatcccagaaagccagttgcttgcaaagacaatttgcc 180
           ||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||
Sbjct: 321 cgggacagggttgcagattaaccatcccagacagccagtcacttgcaaagacaatttgcc 380

                                                                       
Query: 181 ctactcttggaattcattaaaaccctctgttcgctttctttcctctggtgtgttaccttt 240
           ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 381 ctactcttggaattcattaaa-ccctctgttcactttctttcctctggtgtgttaccttt 439

                                                                       
Query: 241 gctcagtgttttgttgatttctttccaggcagtagaaatgttgtcattttgggtggggtt 300
           |||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 440 gctcagtggtctgttgatttctttccaggcagtagaaatgttgtcatttcgggtggggtt 499

                                                                       
Query: 301 gggggagggaaaagcatgagaaaactatcaaactcaaggtgaacagacagggaggggatg 360
           |||| |||| ||||||||||||||||||||||||||||| ||| |||||||||||||| |
Sbjct: 500 gggg-aggggaaagcatgagaaaactatcaaactcaaggggaagagacagggaggggagg 558

                                              
Query: 361 ggngagagaaggggggcagaag---aggagaggag 392
           || |||||| ||| |  |||||   ||||||||||
Sbjct: 559 gg-gagaga-gggag--agaaggaaaggagaggag 589


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 789
Length adjustment: 9
Effective length of query: 383
Effective length of database: 780
Effective search space:   298740
Effective search space used:   298740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)