BAC Information

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BAC

Clone NameMSMg01-496I05
Chromosome3 (Build37)
Map Location 94,145,234 - 94,145,473
singlet/doubletsinglet
Overlap genenone
Upstream geneRptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4
Downstream geneThem5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496I05.T7 (MSMg01no496_i05.b1)MSMg01-496I05.TJ (MSMg01no496_i05.g1)
ACCAG573300AG573301
length735740
length of high quality
(start - end)
248 (75 - 322)649 (82 - 730)
definitionCHROMAT_FILE: MSMg01no496_i05.b1 PHD_FILE: MSMg01no496_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:52 2005CHROMAT_FILE: MSMg01no496_i05.g1 PHD_FILE: MSMg01no496_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGAGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGAGCGA
TCCGCGGAATTCTCCNCTACATCCTACCATTCTGTTTCTGTCAGTCTGTC
CATGGCAAATGATGCTTCTAATTAACTCCATACTCCTAACCATCTGTCTC
ACTGTTCCCCTTGAGACCTTGCACGTCTGTCCCTCAGTGGAGAGCAGCAC
AGTTTTGAAAGTTCTGATATGATCTGGGGACTCAAAAAAACAAAGAGACA
AACTTTTTCCAACAAACCCACAGACCACAGCCTTAGATGCTTTCCTCTTA
TGTCCCAGGTAAGAGTTATTTTATTGTTTCTTCTCCTTGCTAGNTCTTGG
CTAGGGATAGGTTCTGATGTGGAATAGGGGTGGGAGTGCAGAAGATGACT
GTGAGGAGGCTGCTTTGCAAAGGACCTTGTGTGCACTGGAACTCCAGGAG
GGGGTGAAGGCAGCAGATAGTGCAGAGAACGAGGTGACGCAGGCAGTGGA
GGCATTGCCAGGTGCACGTGTCACAGGAAACCCACTAGGGATGACCACGC
AGACTCAGTTGATAGTTGATTGAACTCTTTTTTTTATTTTTTTTTTCCAG
CCTGGCTGGGACTGCCCCCAGGTATTCCGGGACTCCAATGTATCCCTGAG
AATTTATTTTTTTTGAATTTTAAAGGCCTGGGGTTTTTCTCAAGAGATGC
AGGTTTAAGGTTTCCTAATCAAGCAGTTTACTAAG
AAGAGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTGGGAACTCAGGCTCC
CAGAAAAGCTGTTTTCTTGCTACTCTCTGAGCCAGCTCCCCCACAGGAGG
CCGGAGACTGAGGTTTAGCTTTACAATTTGCAACTGAATAAAGTACCTGG
ACTTCCCCAAAAGAAGATTTGCATTGCTACTTTCTCATTGTCTAGATCTT
GTTTTTTCAAACAGGTCAATCAACATCCTCCAGCCGGACTGCAGCGGGCG
TGCATCCCCACCCCCGAGAGCTTTTTTGTGGCGACTGTTATTTTCATTCA
AAGGACATTCCAGCACGTCTCATGGCTTTGGGTCTGATTTGAGATTTAGG
TTTAGCTAGAAAGGCAGATAGATATTTCCAATACTAGAAGATATTGGTTT
TTATTCTGATAGACGGGCTTAGTCCCTTAGCTGCCCTCTGGTTTCCCACC
CTTGCTGTTACTGCAAGGTCCCCTTAGTTCCTCAGGCTGTGGGAATAACA
GAGATGAGGAGGATGACTTCCAGTTCCTATTTTAGCCACAAATCGTGGTG
TTACTAATGACATAATTCTTGTCTAGGCCTTGCTAAAATCTGAGGTTGAC
AGTTCTCCTTTAGGACCTGCACAGTACTCAGAATTGTGCATACTGGTTCG
TGATCATACGAATACAGTATGGGTACCGCTTGGTGCAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_i05.b1 MSMg01no496_i05.b1 CHROMAT_FILE:
MSMg01no496_i05.b1 PHD_FILE: MSMg01no496_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:52 2005
         (248 letters)



>mm_chr3_94145034_94145677
          Length = 644

 Score =  408 bits (211), Expect = e-118
 Identities = 234/249 (93%), Gaps = 14/249 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   taccattctgtttctgtcagtctgtccatggcaaatgatgcttctaattaactccatact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taccattctgtttctgtcagtctgtccatggcaaatgatgcttctaattaactccatact 381

                                                                       
Query: 61  cctaaccatctgtctcactgttccccttgagaccttgcacgtctgtccctcagtggagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cctaaccatctgtctcactgttccccttgagaccttgcacgtctgtccctcagtggagag 321

                                                                       
Query: 121 cagcacagttttgaaagttctgatatgatctggggactcaaaaaaacaaagagacaaact 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||    ||||||| 
Sbjct: 320 cagcacagttttgaaagttctgatatgatcttgggactcaaaaaaaca----gacaaac- 266

                                                                       
Query: 181 tttt-----ccaacaaacccacagaccacagccttagatgctttcctcttatgtcccagg 235
                    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ----aaaaaccaacaaacccacagaccacagccttagatgctttcctcttatgtcccagg 210

                    
Query: 236 taagagtta 244
           |||||||||
Sbjct: 209 taagagtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 644
Length adjustment: 9
Effective length of query: 239
Effective length of database: 635
Effective search space:   151765
Effective search space used:   151765
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)