Query= MSMg01no496_l18.b1 MSMg01no496_l18.b1 CHROMAT_FILE:
MSMg01no496_l18.b1 PHD_FILE: MSMg01no496_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:10 2005
(668 letters)
>mm_chr3_118925069_118926132
Length = 1064
Score = 1189 bits (615), Expect = 0.0
Identities = 651/665 (97%), Gaps = 6/665 (0%)
Strand = Plus / Minus
Query: 5 gaattcactactaaaacttaggaactctgctaatggaagatttaggaatggactgagagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 gaattcactactaaaacttaggaactctgctaatggaagatttaggaatggactgagagg 909
Query: 65 ccaattcaatgttgaaatggctttccaacaaataagaaaaatatacaaagaaataaaaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 ccaattcaatgttgaaatggctttccaacaaataagaaaaatatacaaagaaataaaaac 849
Query: 125 cacacaaaatagcaacttgcttgatagaagtataatgagtcaggtggaaggactttaaaa 184
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 848 cacacaaaatagcaacttgcttgatagaagtataatgagtcgggtggaaggactttaaaa 789
Query: 185 gcagcatccaacttatccgaagaaaccccgacaaggttcctttacattgaaggaacccgg 244
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 788 gcagcatccaacttatccgaagaaacccagacaaggttcctttacattgaaggaacccgg 729
Query: 245 gatgctgcagataagagattttgtgtatgtgcagatatgtgtttgtgtgtgtgtttgtgt 304
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gatgttgcagataagagattttgtgtatgtgcagatatgtgtttgtgtgtgtgtttgtgt 669
Query: 305 gcatgaatgtgtgttcacccttgcccacaaatgcaaatgcctgtg-tgcataggaaaata 363
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 668 gcatgaatgtgtgttcacccttgcccacaaatgcaaatgcctg-gatgcataggaaaata 610
Query: 364 aggtgccttagaaaagcagaaggtgaccccccccttctgtcttactgagtatagttaaat 423
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 609 aggtgccttagaaaagcagaaggtgaccccc----tctgtcttactgagtatagttaaat 554
Query: 424 cttggacaggcaagggtatcaagaatagaagggagggggctggggagatggctcagggct 483
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cttgggcaggcaaggttatcaagaatagaagggagggggctggggagatggctcagggct 494
Query: 484 tcagagcactggctgaaaggagccaggctatgatggtgcatgacttttcccccatctctc 543
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 493 tcagagcactggctgaaaggagccaggctatgatggtgcatgactttttccccatctctc 434
Query: 544 agaaagcagttctcagcatataagccttgggctgaagcctgccagtaatttagttccaga 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agaaagcagttctcagcatataagccttgggctgaagcctgccagtaatttagttccaga 374
Query: 604 ggaactcaacacttctggtctttatgggcaccttcattcatgggcatccacgtgtgtgca 663
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 373 ggaactcaacacttctggtctttatgggcacctgcattcatgggcatccatgtgtgtgca 314
Query: 664 taaac 668
|||||
Sbjct: 313 taaac 309
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1064
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1054
Effective search space: 693532
Effective search space used: 693532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_l18.g1 MSMg01no496_l18.g1 CHROMAT_FILE:
MSMg01no496_l18.g1 PHD_FILE: MSMg01no496_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:10 2005
(654 letters)
>mm_chr3_118892123_118893176
Length = 1054
Score = 1195 bits (618), Expect = 0.0
Identities = 645/654 (98%), Gaps = 1/654 (0%)
Strand = Plus / Plus
Query: 1 attgaaatgccatcttctaagaaatccatttcgaaaagaattgtacagactgaaaattac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgaaatgccatcttctaagaaatccatttcgaaaagaattgtacagactgaaaattac 260
Query: 61 cgggtaaattggagagaaatttttcttcaagtcaaaaacttcacttgtattttagctcct 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgggtaaattggagagaaatgtttcttcaagtcaaaaacttcacttgtattttagctcct 320
Query: 121 tgagaagtgcacatagcctcactctggagtgcttttctttgaaaggtggtgtggggaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagaagtgcacatagcctcactctggagtgcttttctttgaaaggtggtgtggggaggt 380
Query: 181 ctcactgctgagatctgcaaccagtgcctgacaagtagcaggggtggcatcccaaggacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcactgctgagatctgcaaccagtgcctgacaagtagcaggggtggcatcccaaggacc 440
Query: 241 tgtgacatggaagggcaggttctatgtgcagagagctagagactctgcagttactagaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgacatggaagggcaggttctatgtgcagagagctagagactctgcagttactagaat 500
Query: 301 tagaagttcatcgcttaatttagaaaggaaagcttacagtccttgttacacagtgaaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagaagttcatcgcttaatttagaaaggaaagcttacagtccttgttacacagtgaaaac 560
Query: 361 tatgcaaggtgcaagtgcagccttagattttctcatctatacttggtcatttgtagttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatgcaaggtgcaagtgcagccttagattttctcatctatacttggtcatttgtagttaa 620
Query: 421 ttatccaagagaaatacactgtgggtgaaagtagactcttctctatgaatacttctgtcc 480
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 621 ttctccaagagaaatacactgtgggtgaaagtagattcttctctatgaatacttctctcc 680
Query: 481 ttccttctatttctgtcttccgtctttccattgagtcagagtctacgtagcctttggtgg 540
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 681 ttccttctatttctgtcttccgtctttccattgagtcagagtctatgttgcctttggtgg 740
Query: 541 gtctgatacacactaaatagtcaa-ggtggccctgaactcagggcagtccttctgcctca 599
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 gcctgatacacactaaatagtcaaaggtggccctgaactcagggcagtccttctgcctca 800
Query: 600 agactctcaagtgctgggatttcatgcacacattgccattcctggcttccatga 653
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 801 agactctcaagtgctgggatttcatgcatacattgccattcctggcttccatga 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
