NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACCATTTCCTCACAATGAGAGAGCAGGCAGAATGACACGC
ATGGACCACAATAAGCCAAGGTCAGATTCAGATTAAAAGTAAAGGATTAT
GTGGAATTGAGAATAAGGAAGTCTTTAAAGGGGTTTCACGNNNCTTTAGC
CCCTCCCCCACCCTNNCCTTTNAANNNNNNNNANCGCCCATAGTTGATCT
GTCTTGATCGCTGGAAGAGAATGGNNNNNNNNCCATTTTCTTCTTATTAT
TTTNNNNNCCCCCCNNNNNNTCTGNNNGNCGNNNNNNNNNNNNNCNNCCT
TNNNNNNNNGGAGGGGGGGGGGGGGTGGCNNNNNNNNNGGCTTCAATCCN
NNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGCCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGGNNNNNNNNGTTTTNNNNNGGGGGGNNNNN
NCNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGCGGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGGGGGGGGGGGGGGGGGGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGN
NNGGNGGGGGGGGGGGGGGGG

NNNNNCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTTCTCCTAAATTGCTT
GTATAGTACTTTACAAACTGTAGGGTGAGTGTCCTTTTGGCCATTAGTCT
CAACCCATCTGTATACAATATACAGTCTGTGGAGTTGTCTTTATATGTAA
AATTATGACTAATTCAACACTCACTAATGAAACACTTTGGAATTTTTTAA
GTGTATGGTTTAAGCTTTGCAAAGCATCAAGGGAAAAACTGGATTTTCTT
ACTTTTATTTTATTATATATGTATATATATATGATTATATGCTTTATGGG
ACGATATATATTTGAATAATTATGTTTCTCATTAAATTCTTGAGGTTTAG
AGTTAGTGAAATAAATGGGAAAAATAGAAAACAGTAAATAAGTAGTTCTT
TAATAAAAGCATCACACAAATAACATTGAATATTGTTTAACAGTGTTTAC
GCTATTACCGAATATTATACATCTGTGTGCTGGGTGTGTTGTCCTTATTA
ATAGAAATTTTTCATGATTTATCAACTTTCATATATAAATTTGAAAAATA
AAACTTTAAAGACTGTATAGTAGTTTGTATTTTGCAAATCATTAGAAGCA
ACTATTTCCTTATAAAAAGCCAAATGAATTAATAAATGTAATTCCTCACC
TCAACAGCAAAATTGAGCCTCTGTTTTCTGAGTTCTTCCACACACATACA
AN

Query= MSMg01no496_n03.g1 MSMg01no496_n03.g1 CHROMAT_FILE:
MSMg01no496_n03.g1 PHD_FILE: MSMg01no496_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:17 2005
         (645 letters)



>mm_chr3_46425748_46426792
          Length = 1045

 Score = 1081 bits (559), Expect = 0.0
 Identities = 631/669 (94%), Gaps = 25/669 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcttctcctaaattgcttgtatagtactttacaaactgtagggtgagtgtccttttggc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 178 agcttctcctaaattgcttgtatagtactttacaaactgtagggtgagtgtctttttggc 237

                                                                       
Query: 61  cattagtctcaacccatctgtatacaatatacagtctgtggagttgtctttatatgtaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 cattagtctcaacccatctgtatacaatatacagtctgtggagttgtctttatatgtaaa 297

                                                                       
Query: 121 attatgactaattcaacactcactaatgaaacactttggaattttttaagtgtatggttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 attatgactaattcaacactcactaatgaaacactttggaattttttaagtgtatggttt 357

                                                                       
Query: 181 aagctttgcaaagcatcaagggaaaaactggattttcttacttttattttat-------- 232
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||        
Sbjct: 358 aagctttgcaaagcatcaagggaaaaattggattttcttacttttattttattatatata 417

                                                                       
Query: 233 -----tatatatg----------tatatatatatgattatatgctttatgggacgatata 277
                ||||||||          |||||||||||||||||||| |||||||||| |||||
Sbjct: 418 tataatatatatgtatatatacatatatatatatgattatatgatttatgggacaatata 477

                                                                       
Query: 278 tatttgaataattatgtttctcattaaatt-cttgaggtttagagttagtgaaataaatg 336
           |||||||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||
Sbjct: 478 tatttgaataattatgtttctcattaaattgct-gaggtttagagttagtgcaatgaatg 536

                                                                       
Query: 337 ggaaaaatagaaaacagtaaataagtagttctttaataaaagcatcacacaaataacatt 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ggaaaaatagaaaacagtaaataagtagttctttaataaaagcatcacacaaataacatt 596

                                                                       
Query: 397 gaatattgtttaacagtgtttacgctattaccgaatattatacatctgtgtgctgggtgt 456
            |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 597 taatattgtttaacagtgtttacactattaccgaatattatacatctgtgtgctgggtgt 656

                                                                       
Query: 457 gttgtccttattaatagaaatttttcatgatttatcaactttcatatataaatttgaaaa 516
           ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gttgttcttattaatagaattttttcatgatttatcaactttcatatataaatttgaaaa 716

                                                                       
Query: 517 ataaaactttaaagactgtatagtagtttgtattttgcaaatcattagaagcaactattt 576
           |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 717 ataaaactttaaagactgtatattagtttgtactttgcaaatcattagaagcaactattt 776

                                                                       
Query: 577 ccttataaaaagccaaatgaattaataaatgtaattcctcacctcaacagcaaaattgag 636
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 tcttataaaaagccaaatgaattaataaatgtaattcctcacctcaacagcaaaattgag 836

                    
Query: 637 cctctgttt 645
           |||||||||
Sbjct: 837 cctctgttt 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)