Query= MSMg01no496_o13.b1 MSMg01no496_o13.b1 CHROMAT_FILE:
MSMg01no496_o13.b1 PHD_FILE: MSMg01no496_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:24 2005
(426 letters)
>mm_chr3_36194328_36195154
Length = 827
Score = 774 bits (400), Expect = 0.0
Identities = 421/428 (98%), Gaps = 3/428 (0%)
Strand = Plus / Plus
Query: 1 ggttgttggggcacactggttcacggcaaacatttatgtaatgtaagtacactgtaaaat 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggttgttagggcacactggttcacggcaaacatttatgtaatgtaagtacactgtaaaat 260
Query: 61 actcacaaaaa-tatggtaaatacataaaccac-aaatacatattgtcaagtgctatgga 118
||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 261 actcacaaaaagtatggtaaatacataaacc-cgaaatacatattgtcaagtgctatgga 319
Query: 119 ctgcacttacttctgctctttggacactggcagctagacagctttattgatatcattgtc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 320 ctgcacttacttctgctctttggacactggcagctagacagctttattgatatcagtgtc 379
Query: 179 actttgtgagtgacaagctgtgctatcacggtgtgacagctgcagtgtcgacagattact 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 actttgtgagtgacaagctgtgctatcacggtgtgacagctgcagtgtcgacagattact 439
Query: 239 ggaatattttggctccactgtatggggcctccatgacaggtggagttcatcactgtctgg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggaatattttggctccactgtatggggcctccatgacaggtggagttcatcactgtctgg 499
Query: 299 agtgtcactctgtagcatggctgtacaaaatacgtgtttcctgaaaacacattgggtata 358
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 500 agtgtcactctgtagcatggctgtacgaaatacgtgtttcctgaaaacacactgggtata 559
Query: 359 ttgacatcatgttccataaaggacgagtaaccaacctcctcagatctgatttctgtgact 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttgacatcatgttccataaaggacgagtaaccaacctcctcagatctgatttctgtgact 619
Query: 419 gctcacaa 426
||||||||
Sbjct: 620 gctcacaa 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 827
Length adjustment: 9
Effective length of query: 417
Effective length of database: 818
Effective search space: 341106
Effective search space used: 341106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_o13.g1 MSMg01no496_o13.g1 CHROMAT_FILE:
MSMg01no496_o13.g1 PHD_FILE: MSMg01no496_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:24 2005
(667 letters)
>mm_chr3_36350223_36351291
Length = 1069
Score = 1185 bits (613), Expect = 0.0
Identities = 654/674 (97%), Gaps = 12/674 (1%)
Strand = Plus / Minus
Query: 1 gtgtaatatttattcttatacgagttgctttcatccacttgaggctaaatctgaacataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 gtgtaatatttattcttatacgagttgctttcatccacttgaggctaaatctgaacataa 810
Query: 61 ccgtgtttcttcatggaaagtaggagaatgacatggcagtggagggagcaaactcctgag 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 809 ccgtgtttcttcatggaaagtaggagaatgacatagcagtggagggagcaaactcctgag 750
Query: 121 ttttcctttgggaagtccgtgttggtgttctgaatacatggttatctggttatttacctg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 749 ttttcctttgggaagtccgtgttggtgttctgaatacatggttatctggttatttaccgg 690
Query: 181 attatgtggaagcactaagaacattagtaggaatcgtcttaaagccacattaagaataat 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 attatatggaagcactaagaacattagtaggaatcgtcttaaagccacattaagaataat 630
Query: 241 -cnatggccctccgatgtcttagacaccatcatagaggtttgcaagcgtggcttgtcttc 299
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 actatggccctctgatgtcttagacaccatcatagaggtttgcaagcgtggcttgtcttc 570
Query: 300 aatacccacagggctttagaatgctttgaatactcttctcacagctcattatgctgacta 359
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 569 aatacccacagggctttagaatgctttgaatactcttctcacagctcattatactgacta 510
Query: 360 agaagttaatatctggctagagataaatccgggtctttgatgtgacagaatatgggaaga 419
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 agaagttattatctggctagagataaatccgggtctttgatgtgacagaatatgggaaga 450
Query: 420 gg------ttcccccccccaggttaaataatttggagtttcgattaaatgctcagaatga 473
|| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 449 ggtttttttt-----ccccaggttaaataatttggagtttcgattaagtgctcagaatga 395
Query: 474 ctggagaagtgaatttgcaggtggttatagtttttagatgctctccagatcctgcaggcc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctggagaagtgaatttgcaggtggttatagtttttagatgctctccagatcctgcaggcc 335
Query: 534 caggtcctggactcacatggtctgaaggctgcctctgtctattctgagcatttgtgcaag 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 caggtcctggactcacatggtctgaaggctgcctctgtctattctgagcatttgtgcaag 275
Query: 594 aaccaactttaaaaagtagcctttcatctgagcacacagtcaatgagttagacacttggc 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaccaactttaaaaagtagcctttcatctgagcacacagtcaatgagttagacacttggc 215
Query: 654 tctttcatgatgaa 667
||||||||||||||
Sbjct: 214 tctttcatgatgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1069
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1059
Effective search space: 695763
Effective search space used: 695763
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
