BAC Information

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BAC

Clone NameMSMg01-497E05
Chromosome3 (Build37)
Map Location 89,888,059 - 89,888,632
singlet/doubletsinglet
Overlap geneTpm3
Upstream geneRusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik
Downstream geneNup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497E05.T7 (MSMg01no497_e05.b1)MSMg01-497E05.TJ (MSMg01no497_e05.g1)
ACCAG573874AG573875
length754752
length of high quality
(start - end)		684 (50 - 733)574 (79 - 652)
definitionCHROMAT_FILE: MSMg01no497_e05.b1 PHD_FILE: MSMg01no497_e05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:53 2005CHROMAT_FILE: MSMg01no497_e05.g1 PHD_FILE: MSMg01no497_e05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGAGGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTTTTTATCGGTTGGGCATGGGGCCTGCCTTTAAGTGTGG
ATTGCGGACCCACACTTAAAGACTAACATATTTTATTTTTGCTGTTGTTG
TTTTAAAACAGGGTCTTACTATGAATGTGTGGCTAGCCTGGAACTCACTA
TGTAGACCAGAGTGGCCTCAAAGTCACAAAGATCCTCAACTGGCACACCA
AGTTTTTAAAAAATACTTTTAAAATTTTATCTGTAAAGGTGTCTGGAGGT
GCTGGAGAGATGGCTCAGCAGTTTGGGGCATTGACTGCTCTTCCAAAGGT
CCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAATGGGATCCACC
TGTAATGGGATCCAATGCCCTCTTCTGGTGTGTCTGAAGACAGTTACAGC
ATACTCATATAAATAAAATAAATCTTTAGAAAAAAAAAGGAAAAAAAAAG
GTGTATGGGGCTGGAGAGATGGCTCAATGGTTAAGGGCACTGACGGCTTT
TCCGGAGGCCCTGAGTTCAGGTCCCAGTAACCACATGGTAGCTCATAGCC
ATCTATAATGGGATCTGATGCCCTCTTCTGGCATGCAAGTATACATGCAG
ATAGAGCACTCCTATACATAAAATAAATGTAAAAAACATATATCTGTATG
TGTGTCTCTATGTGGCTATGTTCACATGTGAGTGCCAGGTATTCTCAGAG
TCCA

NNCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTGTAAATGCTGTTTGGTAG
AAGAAAGTGCCAGAGCCAGCTTGTTGCCATGGGAACTATACCCTGCCCCC
AGAGCCTGTTATCTTTTTCCAGTTTGGGTAACTAGGAGCTGGAAAGGGAC
TTAACATTTCATGTGCTTCCTGCAGATCCAGCTGCATTTTTCTCTTTAAT
TCCCCCCACCCCCAGGTTTATTGATTTTTCTGTGAATCAGTGTTTTTGCC
TGTGTGGTGTATGTATGTGTATTATGTATGTGTTTGGTGCCCATGGAAGT
CAGAAGAGGGCTTTGGAGCCTCTGAAACTGGAATTATGGATGGTTGTGGA
TCACTGTGTGGGTGCTGGGAATCAAACCTGGGTTCTCTGTAAGAGCAACT
GGTGCTGTTAACTGCCGAGCCATCTCTCCAGCCCCTCAGGCTGCATTTTT
CATGTTTTTGTTGTAACCGTAGTAAGGGGTAAGTACTGTGTGGTATTGTG
AGTGTATCACAGCCCTGGTCTGATAGCCTGGCTTGCTCTGGACTGGTTGG
CCCTGTTGAGTTTGTGAGGATAAATCTGTGTTGTCTTCCAGGACATCTGT
TTTCCTAGAAGAGACAGAACTAGAGAATGCTTGCCTTTGTGGTGTTCTGA
ATGGTAGAGTTTAGGACACAAATGGTTTCTCAGGAATTTCTATTTATGTA
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_e05.g1 MSMg01no497_e05.g1 CHROMAT_FILE:
MSMg01no497_e05.g1 PHD_FILE: MSMg01no497_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:53 2005
         (574 letters)



>mm_chr3_89887859_89888832
          Length = 974

 Score = 1087 bits (562), Expect = 0.0
 Identities = 571/574 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttgtaaatgctgtttggtagaagaaagtgccagagccagcttgttgccatgggaacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttgtaaatgctgtttggtagaagaaagtgccagagccagcttgttgccatgggaacta 260

                                                                       
Query: 61  taccctgcccccagagcctgttatctttttccagtttgggtaactaggagctggaaaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taccctgcccccagagcctgttatctttttccagtttgggtaactaggagctggaaaggg 320

                                                                       
Query: 121 acttaacatttcatgtgcttcctgcagatccagctgcatttttctctttaattcccccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttaacatttcatgtgcttcctgcagatccagctgcatttttctctttaattcccccca 380

                                                                       
Query: 181 cccccaggtttattgatttttctgtgaatcagtgtttttgcctgtgtggtgtatgtatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccccaggtttattgatttttctgtgaatcagtgtttttgcctgtgtggtgtatgtatgt 440

                                                                       
Query: 241 gtattatgtatgtgtttggtgcccatggaagtcagaagagggctttggagcctctgaaac 300
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaccatgtatgtgtttggtgcccatggaagtcagaagagggctttggagcctctgaaac 500

                                                                       
Query: 301 tggaattatggatggttgtggatcactgtgtgggtgctgggaatcaaacctgggttctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggaattatggatggttgtggatcactgtgtgggtgctgggaatcaaacctgggttctct 560

                                                                       
Query: 361 gtaagagcaactggtgctgttaactgccgagccatctctccagcccctcaggctgcattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaagagcaactggtgctgttaactgccgagccatctctccagcccctcaggctgcattt 620

                                                                       
Query: 421 ttcatgtttttgttgtaaccgtagtaaggggtaagtactgtgtggtattgtgagtgtatc 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcatgtttttgttgtaaccgtcgtaaggggtaagtactgtgtggtattgtgagtgtatc 680

                                                                       
Query: 481 acagccctggtctgatagcctggcttgctctggactggttggccctgttgagtttgtgag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acagccctggtctgatagcctggcttgctctggactggttggccctgttgagtttgtgag 740

                                             
Query: 541 gataaatctgtgttgtcttccaggacatctgttt 574
           ||||||||||||||||||||||||||||||||||
Sbjct: 741 gataaatctgtgttgtcttccaggacatctgttt 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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