BAC Information

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BAC

Clone NameMSMg01-497H21
Chromosome3 (Build37)
Map Location 66,139,647 - 66,312,219
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
Downstream geneLOC625115, Shox2, Rsrc1, Mlf1, Gfm1, Lxn, Rarres1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497H21.T7 (MSMg01no497_h21.b1)MSMg01-497H21.TJ (MSMg01no497_h21.g1)
ACCAG574048AG574049
length773774
length of high quality
(start - end)		459 (74 - 532)521 (83 - 603)
definitionCHROMAT_FILE: MSMg01no497_h21.b1 PHD_FILE: MSMg01no497_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:12 2005CHROMAT_FILE: MSMg01no497_h21.g1 PHD_FILE: MSMg01no497_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,139,647 - 66,140,105)(66,311,699 - 66,312,219)
sequence
NAAATAATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGG
ATCCGCGGAATTCTAAAATTAGTTACATGTTGCAAGGCCTAGTAAATGTT
TGCTGTTGTCGGGTTATGTTTTGCTATGTCATGTTACGATATGGTATTTT
AAAAAGCAACAAAGCTTTGTTTTGACTTATCTGTTGCTGCCCAATGAAAC
ATTTTTAACAATGGCCAATGTTATATCACAGATACTATGGACCAGAAATG
CAGACAGGGTACTGAGGACGTACTTGATTTCCTGGAGCCACGATGATGGA
GTGACCCAACAGCTGAGGGTCAGCTGAAGGCTGCCCACTCAGGTGTCCCA
TAGTCAGTGTTGAGAATCAGTGAAATCTTGCCTGGGGTTCAGGGGTGAAC
CATCTACTTAAGGTTCCTGCACTCTCAGCATGTGGGGTAGGTTCTACTGG
TGAGCACCCTAACAGGCAGATGGAAGCTGTGTCATCTTTTATGCTTTAGC
CCTGGAAGTCTCCCAGCATCTCTTCTCTTAATGTTTCAGATTCAAAGTTT
AGTAGCATAGACGCTTGGTATCAAATGGAGGGATATCAAGAATCACTTCT
TAAGAAATCATCTATTTTATTGTTGCCATACTAGAAAATTCTCTGCATCA
CGTTCCCAACTGATAATAAAGTAGGACACAGGAGAATTAACTATTTGTGG
GCTTAAATTAAATTGGATTTTGGAGTTTAACACCCTTGAACATGTCTTAA
ATGAAAAAATGTTGAAAAAATGT

ATTTTTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTGATAGCCAAGGATG
ATACGTGACCATGGATGAGGAAAGATATGCTCATGAGGGTACAGCAATAG
TATATGAATAATAGCTTGCATCACCCTTACAACATTTCCACAGTGTGAGA
GGGTCTCTGGTCGTGTATGATCAAGAGGCGGCAGGGTTCATAGCACATCT
GGTTTCAGCAAGAAATTCGAAACATATTTAATGGCACTAATGATTAATTT
AATATTAATTCAGCAGATGCCTACTGAGTATCTACTATATTTAGACACTG
GGGATATGATATGAATGATGTCTCTTAAGAAACTAATTATGTAAGTTTGC
TTTATGTAATAACTTGGCATAGGAATTAAGGAATAGATCAAGAATGAAAC
CCTGACCGCTTGGGGTCTTAGTCTTGGCAATGGGAAGGAGATTTATTTAC
TGAATGAGAAAAAAAATGGAGAAAGAGAAAGAGGAGGTTTGAGTGGCTGT
AGCTGCTATGCTTTTAGATGAACTGAGATGTGAGTATTGGGGATATCTCT
CCATGGAGAGACTCATTAAGCCAGGGAGCTCTCAAAAGATAATGTGATTT
AAAATGAGCATCTTAAATGGTGTTAGCATGAAATGAGAATGGGAGGAATT
TATTGTGGGGAAGAAACCCCCGGCGGAAAAAAATTTATAAGCGGGATTTA
AAAACTTTAAACACAATGCTCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_h21.b1 MSMg01no497_h21.b1 CHROMAT_FILE:
MSMg01no497_h21.b1 PHD_FILE: MSMg01no497_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:12 2005
         (459 letters)



>mm_chr3_66139447_66140305
          Length = 859

 Score =  833 bits (431), Expect = 0.0
 Identities = 452/459 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacatgttgcaaggcctagtaaatgtttgctgttgtcgggttatgttttgctatgtcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacatgttgcaaggcctagtaaatgtttgctgttgtcgggttatgttttgctatgtcatg 260

                                                                       
Query: 61  ttacgatatggtattttaaaaagcaacaaagctttgttttgacttatctgttgctgccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacgatatggtattttaaaaagcaacaaagctttgttttgacttatctgttgctgccca 320

                                                                       
Query: 121 atgaaacatttttaacaatggccaatgttatatcacagatactatggaccagaaatgcag 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaaaaatttttaacaatggccaatgttatatcacagatactatggaccagaaatgcag 380

                                                                       
Query: 181 acagggtactgaggacgtacttgatttcctggagccacgatgatggagtgacccaacagc 240
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 atggggtactgaggacgtacttgatttcctggagccacgatgatggagtgacccaacggc 440

                                                                       
Query: 241 tgagggtcagctgaaggctgcccactcaggtgtcccatagtcagtgttgagaatcagtga 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 tgagggtcagctgaaggctgcccactcaggtgtcccacagtcagtgttgagaatcagtga 500

                                                                       
Query: 301 aatcttgcctggggttcaggggtgaaccatctacttaaggttcctgcactctcagcatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 501 aatcttgcctggggttcaggggtgaaccatctacttaaggttcctgcactctcattatgt 560

                                                                       
Query: 361 ggggtaggttctactggtgagcaccctaacaggcagatggaagctgtgtcatcttttatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggggtaggttctactggtgagcaccctaacaggcagatggaagctgtgtcatcttttatg 620

                                                  
Query: 421 ctttagccctggaagtctcccagcatctcttctcttaat 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttagccctggaagtctcccagcatctcttctcttaat 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no497_h21.g1 MSMg01no497_h21.g1 CHROMAT_FILE:
MSMg01no497_h21.g1 PHD_FILE: MSMg01no497_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:12 2005
         (521 letters)



>mm_chr3_66311499_66312419
          Length = 921

 Score =  992 bits (513), Expect = 0.0
 Identities = 519/521 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtgatagccaaggatgatacgtgaccatggatgaggaaagatatgctcatgagggtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 atgtgatagccaaggatgatacgtgaccatggatgaggaaagatatgctcatgagggtac 662

                                                                       
Query: 61  agcaatagtatatgaataatagcttgcatcacccttacaacatttccacagtgtgagagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 agcaatagtatatgaataatagcttgcatcacccttacaacatttccacagtgtgagagg 602

                                                                       
Query: 121 gtctctggtcgtgtatgatcaagaggcggcagggttcatagcacatctggtttcagcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gtctctggtcgtgtatgatcaagaggcggcagggttcatagcacatctggtttcagcaag 542

                                                                       
Query: 181 aaattcgaaacatatttaatggcactaatgattaatttaatattaattcagcagatgcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaattcgaaacatatttaatggcactaatgattaatttaatattaattcagcagatgcct 482

                                                                       
Query: 241 actgagtatctactatatttagacactggggatatgatatgaatgatgtctcttaagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 actgagtatctactatatttagacactggggatatgatatgaatgatgtctcttaagaaa 422

                                                                       
Query: 301 ctaattatgtaagtttgctttatgtaataacttggcataggaattaaggaatagatcaag 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctaattatataagtttgctttatgtaataacttggcataggaattaaggaatagatcaag 362

                                                                       
Query: 361 aatgaaaccctgaccgcttggggtcttagtcttggcaatgggaaggagatttatttactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aatgaaaccctgaccgcttggggtcttagtcttggcaatgggaaggagatttatttactg 302

                                                                       
Query: 421 aatgagaaaaaaaatggagaaagagaaagaggaggtttgagtggctgtagctgctatgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aatgagaaaaaaaatggagaaagagaaagaggaggtttgagtggctgtagctgctatgct 242

                                                    
Query: 481 tttagatgaactgagatgtgagtattggggatatctctcca 521
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gttagatgaactgagatgtgagtattggggatatctctcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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