BAC Information

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BAC

Clone NameMSMg01-497H23
Chromosome3 (Build37)
Map Location 70,309,597 - 70,365,993
singlet/doubletdoublet
Overlap genenone
Upstream genePpm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414, LOC100041384, LOC625868
Downstream geneLOC670542, EG625901, EG667377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497H23.T7 (MSMg01no497_h23.b1)MSMg01-497H23.TJ (MSMg01no497_h23.g1)
ACCAG574052AG574053
length786791
length of high quality
(start - end)		506 (47 - 552)324 (77 - 400)
definitionCHROMAT_FILE: MSMg01no497_h23.b1 PHD_FILE: MSMg01no497_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:13 2005CHROMAT_FILE: MSMg01no497_h23.g1 PHD_FILE: MSMg01no497_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,309,597 - 70,310,099)(70,365,670 - 70,365,993)
sequence
NNAATCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAACAGGGTAATTCCTTTGCCACTGATCTGAAAACATGGAGTCA
TCCATCCATGGATTTGGGAAACTGTGAGTCAAAGTAAGTATCTTCCCCAT
TTTGCTTTTTGTAACTATTTTCTCACAATAAACCAAGCTAATTAATATAA
TTCTTAACATCGTAATCATTATCATCATAATCATCCTCACAGCAGCAATA
CTAATTATTTTTAGTATTACCTTTCATATTTCTCAGGTGCTTCATTAAAT
ATTTTCATCAAGACTGCTTTTTTTCCTCCTCTAACACATCTGCTTAACCA
TTTTTAAAGTGGAAAGGACTATAAGCTAACTTATTCACATGTTGTTCATA
TTATTTCATCTTCCCGGAGAATAACTTTCAGCAATATATACATATTAGAG
AAATAAATGTGTCAATTTGGTAAATATTTATAGTCATAATATGTTACAGA
ACACATTATCAGAATTGTTATAGAACAAATTTTTTCTAGACAGATAAACA
ATACCAATAAAAAAACCGATTAGTTAGATAATGTCATTTGTTGGTCTAAC
ATATTCCAATATAGGCTTTGTCCAGCTTCCTAAACTTTATGATTTAAACC
CCCTTTATTCGTGCAAAATATAAACAGTTACGATTTTTTAGTCTCACATC
AACAGAAAACTGCTTTCACATCTCTTGGAGGGGGGTTTACATTCTCTTTC
TTTGCCCCCGGCAACACACGACTTCCCCAATTTGTC

NCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCTATTTCTTAGGGAAGCAGG
CCTAGTTTGCTCATAATGTTATTAGAATAATTGGTAGTTCTTCTAAATAT
TTAAATCACCCAGTATTAAAAGTAGGTGTAGTCTCCTGAGGCTGAAAATC
TGTTGTGATATCCAAGAAAAACGTTTTATGATTTGCTGTGCCTACAAGTG
TGCATGAACATATATACAAAATTTTACATTTTCAGAGACTGCAGAAAGCA
TAATTACAGACTATAATCATGTCCCCCCAATCCCTTATACTATAAAAATT
CAAGCATTGCACTTATTGATTCTGAATGCACATATTCCAAGCCTATATCC
AACCACAAACTGTTACTGTTAAAAATAAAATGGAAAACCCTCACATTTAT
TGAAATAGATTCTGACTAAGCATTATTAATGATTTATCATTGCAAATAAT
GGATATAGTGATTCAGCATAGGGAATAGTTTACCCCGAAAGTCCTTGAGA
AAAAGGCTTGGAAAAACATTTTCGGGTTACTTTTCTTTCACCACCCTAAA
TTGGCCAAAAAAAAATTTTCAAAAAAGGGGGCTTGGGGATTTCTTAAGGG
AGAAAAAAAATCTGCGCCGGAAAAAAAAGGCTTTTTCCCCCGGGGAAATT
TAAAGGCCCCTGGCCCCCCGGATATGGGTTTTTTTGGGGGAATTTAGTCT
TTTAAAAAAGGCAAAAATCCCGCGAAAGGGCTCTTTTAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_h23.b1 MSMg01no497_h23.b1 CHROMAT_FILE:
MSMg01no497_h23.b1 PHD_FILE: MSMg01no497_h23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:13 2005
         (506 letters)



>mm_chr3_70309394_70310299
          Length = 906

 Score =  942 bits (487), Expect = 0.0
 Identities = 499/503 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaacagggtaattcctttgccactgatctgaaaacatggagtcatccatccat 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaacaggataattcctttgccactgatctgaaaacatggagtcatccatccat 263

                                                                       
Query: 64  ggatttgggaaactgtgagtcaaagtaagtatcttccccattttgctttttgtaactatt 123
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggatttggaaaactgtgagtcaaagtaagtatcttccccattttgctttttgtaactatt 323

                                                                       
Query: 124 ttctcacaataaaccaagctaattaatataattcttaacatcgtaatcattatcatcata 183
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 324 ttctcacaataaaccaagctaattaatgtaattcttaacatcgtaatcattatcatcata 383

                                                                       
Query: 184 atcatcctcacagcagcaatactaattatttttagtattacctttcatatttctcaggtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcatcctcacagcagcaatactaattatttttagtattacctttcatatttctcaggtg 443

                                                                       
Query: 244 cttcattaaatattttcatcaagactgctttttttcctcctctaacacatctgcttaacc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttcattaaatattttcatcaagactgctttttttcctcctctaacacatctgcttaacc 503

                                                                       
Query: 304 atttttaaagtggaaaggactataagctaacttattcacatgttgttcatattatttcat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atttttaaagtggaaaggactataagctaacttattcacatgttgttcatattatttcat 563

                                                                       
Query: 364 cttcccggagaataactttcagcaatatatacatattagagaaataaatgtgtcaatttg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttcccggagaataactttcagcaatatatacatattagagaaataaatgtgtcaatttg 623

                                                                       
Query: 424 gtaaatatttatagtcataatatgttacagaacacattatcagaattgttatagaacaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtaaatatttatagtcataatatgttacagaacacattatcagaattgttatagaacaaa 683

                                  
Query: 484 ttttttctagacagataaacaat 506
           ||||||| |||||||||||||||
Sbjct: 684 ttttttcaagacagataaacaat 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no497_h23.g1 MSMg01no497_h23.g1 CHROMAT_FILE:
MSMg01no497_h23.g1 PHD_FILE: MSMg01no497_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:13 2005
         (324 letters)



>mm_chr3_70365470_70366193
          Length = 724

 Score =  627 bits (324), Expect = 0.0
 Identities = 324/324 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgctatttcttagggaagcaggcctagtttgctcataatgttattagaataattggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tctgctatttcttagggaagcaggcctagtttgctcataatgttattagaataattggta 465

                                                                       
Query: 61  gttcttctaaatatttaaatcacccagtattaaaagtaggtgtagtctcctgaggctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gttcttctaaatatttaaatcacccagtattaaaagtaggtgtagtctcctgaggctgaa 405

                                                                       
Query: 121 aatctgttgtgatatccaagaaaaacgttttatgatttgctgtgcctacaagtgtgcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aatctgttgtgatatccaagaaaaacgttttatgatttgctgtgcctacaagtgtgcatg 345

                                                                       
Query: 181 aacatatatacaaaattttacattttcagagactgcagaaagcataattacagactataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aacatatatacaaaattttacattttcagagactgcagaaagcataattacagactataa 285

                                                                       
Query: 241 tcatgtccccccaatcccttatactataaaaattcaagcattgcacttattgattctgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tcatgtccccccaatcccttatactataaaaattcaagcattgcacttattgattctgaa 225

                                   
Query: 301 tgcacatattccaagcctatatcc 324
           ||||||||||||||||||||||||
Sbjct: 224 tgcacatattccaagcctatatcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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