BAC Information

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BAC

Clone NameMSMg01-497K20
Chromosome3 (Build37)
Map Location 106,561,504 - 106,562,002
singlet/doubletsinglet
Overlap genenone
Upstream geneRap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik
Downstream geneCd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497K20.T7 (MSMg01no497_k20.b1)MSMg01-497K20.TJ (MSMg01no497_k20.g1)
ACCAG574186AG574187
length741734
length of high quality
(start - end)		627 (53 - 679)569 (80 - 648)
definitionCHROMAT_FILE: MSMg01no497_k20.b1 PHD_FILE: MSMg01no497_k20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:27 2005CHROMAT_FILE: MSMg01no497_k20.g1 PHD_FILE: MSMg01no497_k20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTGACTTGCTTTAAGGAAAACTGGTTATTTTCGTGGT
GCTCTATAGGGAAAATATCTATTGCATTTTCTGAGTCATATAAAGAGTCA
TGTATTCCTCTTTGTTCAGACTAACACTTAGTGGTGACATTACCAGTAAG
TTTTCCTGCCTAATGCCTGAGCTTTGTTCTTAGCTCTACTTTGTTCTTCA
CTCCAAATAAAATGTTATGGAGTTCTAAGGATTTACCTATCAAGTATTAC
TAAATCTATCTATCTCATCATCTTAGTCCTTGAAGTCTTTCAATAGCCCA
TTGTATTAGTCAGGGTTCTCCAGAGTCACAGAACTAATGGAATGTCTCTT
TATATTGAGGGAATTTATTATGATGACTTACAGTCTTTAGTCCAACTAAC
CCAACAATGGTCAGCTGTGAATGGGAGGTTCAAGAATCTAGTAGTTGCTC
AGTCCCAAGAGATTAGTTGTTTCAGCTGGTCTTCTGTAGAAGTAGGTTCC
AGCAGATGTGCTGGCAAGTAAGTACAAGCAGTCAAAGAATAGAGTGAATC
TTCCTTCTTCCAATGTCCTTTTGTAGGTGTGGCCCTGATTAAAGATGTAC
ATCTAGATCTGGGATTTGCTTTGTCCCAGGTTGACCTTGAACTCAGAGAT
CTTGGCTCAGTCTCCCAGGATTAAGGGCATATACTACCTTT

AAAAATCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGTTCTGCGCCCCA
TTAAAAAATGGGGTTATTTGATTTTCTGGAGTCCAACTTCTTGAGTTCTT
TATATATATTGGATATTAGTCCCCTCTCTGATTTGGGATTGTTAAAGATC
CTTTCCCAATCTGTTGGTGGCCTTTTTTGTCTTATTGATGGTGTCTTTTG
CCTTACAGAAGCTTTGTAATTTTATGATGTCTCATTTGTCGATTCTCGAT
CTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTGCC
AATATCTTCGAGGCTTTTCCCCACTTTCTCCTCTACAAGTTTGAGTGTCT
GTGGTTTTATGTGGAGGTCCTTGATCCACTTGGACTTGATCTTTGTACAA
GGAGATTCGAATGGGTTGATTTGCATTCTTTTACATGCTAACCGCTGGTT
GAACCAGCACCATTTGTTAAAAATGCTGTCTTTTTTTTCCACTGGATGGT
TATAGCTCCTTTGTTAAATATCAAGTGATGATATGTGTGTGGGTTCATTT
CTGGGTCTTCAATTCCATTGATCTTCCTGCCTTTCTCTGTACCGATTCCA
TTCAGGTTTTATCACTATTTCTCTGTAATACAGCTTGAGGTCAGGAATGG
TGATTCCCTCAGAGATTCTTTTATTGTTTGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_k20.b1 MSMg01no497_k20.b1 CHROMAT_FILE:
MSMg01no497_k20.b1 PHD_FILE: MSMg01no497_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:27 2005
         (627 letters)



>mm_chr3_106561504_106562530
          Length = 1027

 Score =  957 bits (495), Expect = 0.0
 Identities = 498/499 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgacttgctttaaggaaaactggttattttcgtggtgctctatagggaaaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gaattctctgacttgctttaaggaaaactggttattttcgtggtgctctatagggaaaat 440

                                                                       
Query: 65  atctattgcattttctgagtcatataaagagtcatgtattcctctttgttcagactaaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atctattgcattttctgagtcatataaagagtcatgtattcctctttgttcagactaaca 380

                                                                       
Query: 125 cttagtggtgacattaccagtaagttttcctgcctaatgcctgagctttgttcttagctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cttagtggtgacattaccagtaagttttcctgcctaatgcctgagctttgttcttagctc 320

                                                                       
Query: 185 tactttgttcttcactccaaataaaatgttatggagttctaaggatttacctatcaagta 244
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tactttgttcttcactcccaataaaatgttatggagttctaaggatttacctatcaagta 260

                                                                       
Query: 245 ttactaaatctatctatctcatcatcttagtccttgaagtctttcaatagcccattgtat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttactaaatctatctatctcatcatcttagtccttgaagtctttcaatagcccattgtat 200

                                                                       
Query: 305 tagtcagggttctccagagtcacagaactaatggaatgtctctttatattgagggaattt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tagtcagggttctccagagtcacagaactaatggaatgtctctttatattgagggaattt 140

                                                                       
Query: 365 attatgatgacttacagtctttagtccaactaacccaacaatggtcagctgtgaatggga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 attatgatgacttacagtctttagtccaactaacccaacaatggtcagctgtgaatggga 80

                                                                       
Query: 425 ggttcaagaatctagtagttgctcagtcccaagagattagttgtttcagctggtcttctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  ggttcaagaatctagtagttgctcagtcccaagagattagttgtttcagctggtcttctg 20

                              
Query: 485 tagaagtaggttccagcag 503
           |||||||||||||||||||
Sbjct: 19  tagaagtaggttccagcag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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