BAC Information

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BAC

Clone NameMSMg01-497P24
Chromosome3 (Build37)
Map Location 90,446,673 - 90,447,230
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6
Downstream geneS100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497P24.T7 (MSMg01no497_p24.b1)MSMg01-497P24.TJ (MSMg01no497_p24.g1)
ACCAG574431AG574432
length799768
length of high quality
(start - end)		40 (76 - 115)565 (77 - 641)
definitionCHROMAT_FILE: MSMg01no497_p24.b1 PHD_FILE: MSMg01no497_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:52 2005CHROMAT_FILE: MSMg01no497_p24.g1 PHD_FILE: MSMg01no497_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTTTATTTCCTGCCTCTAAACGACTCACTATATACATTAAATCCGCGG
AATTCAAAGACCTGCCAAATAATGATATGCCAAATTCCTTCAAGGTAATA
CTTGATTAATGAGAGATTGGGCTTAAATCTATAACAATTAGGGATAAAAT
TCCTGCATCTTCACATATATCAAGCAAAGGTTTCTGGGGTATGGGGTGGT
CCCAGTCTGCTGGGGGCTNNNNNNNNNNNNNNNNNNNNNCCNNNTTTNNN
NNAAAAAATTTTTTAAAAAAAAAATTTTNNTTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAANNNNNNNNNCTTNNN
NNNNNNNNNTTNNNNAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTTTTTTTTTTNNNTNNNNNNNNNNNNNNNNNNNTTNAAACNNCAACA
CATGTCTGACACAACCTATCCAACTTGTTATTTTACCCAAAAAATTTTTT
TCTTCAAACTTTACCCAAATCAAACCTTTTTTTCTACAAATTTAAACTCC
CTTCCTCTTCNNATACCCCCCTTATTTTATTATAATTTTATCCTGNNNTN
NNNNNTTTNNTTTNNNNNNNTTTTTTTTTCTTTTCTTTNCCTTTTCTTCT
TTCCTCTTCTCCCNCCTTTATCTTCCTCCCCCCCCCTNCTATATTTCACC
AATCATTTCCCCTCCTTTTTTCCCCTTTTTTCNNNCTTTCTTTTTTTCCT
TTTCTTCCCTTCTCCCTCACAATTTTATTTTTTTTTATTTTTTTTTTTT

NACGATGCTGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCCTGGCAGTTGCTTCTCAGG
TGTCTTCCTGTGACACAAGGTTGAGGTTGGTGTGCATCAGCTATTGGGAC
CCCTCCCATTGTGTAGCCGCCAGTGGCCATGGGTTCCTGGGTTCCTGAAA
GGAAAGCTGGGGTTGGATGGGAAAGGCGGTGAGAAAAATAACGAGCCAAG
ACAAAGTTCCCTGGTCAAGGCCAATATTTACTTATGAGTCTGAGCTTATA
AGGCGGCGGCGGGGGGGGGGTACTCTCATCTCCCTCTTTGCCAGGATCTC
ATTGCTATGTCAGGATCTAGTCAGGAAAACAGGTTCAGCCTTTCAGCAGG
CGTTTTGGAGGGAGCAGCAGATGTGGCAGGACAATAGACTTTACCTCGGT
CAGAAGACTCCACCCTAGGTGGGCTAGCAACTGTGGCAAACAAGGTCTGA
GCCAGTTTGCTCAAGTCTGGTGGTGGGTGGTGGGGGAGGGTACATCATTG
CTCCCTCCAGAACCTCCACTCAGATCCCTTCTAGATCTGGTGTCTTTCCA
AGGTCTCTGCTTTAAACAGGCTGATATTTAATTACCGCCAAGTTTCAGCT
GATTAATGACTTAGTTAATTTAGGGGAAAGCCACTCTGAGTTTGTTGTGG
GGCAAATTCTGTGCTAAATGCTGGTGATGCACCTGAGCACTGTTTGTTAA
AACAACACTTCTTAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_p24.g1 MSMg01no497_p24.g1 CHROMAT_FILE:
MSMg01no497_p24.g1 PHD_FILE: MSMg01no497_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:52 2005
         (565 letters)



>mm_chr3_90446466_90447430
          Length = 965

 Score =  930 bits (481), Expect = 0.0
 Identities = 543/569 (95%), Gaps = 15/569 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagcctggcagttgcttctcaggtgtcttcctgtgacacaaggttgaggttggtgtgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tcagcctggcagttgcttctcaggtgtcttcctgtgacacaaggttgaggttggtgtgca 267

                                                                       
Query: 61  tcagctattgggacccctcccattgtgtagccgccagtggccatgggttcctgggttcct 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 268 tcagctattgggacccctcccattgtgtagccgccagtgcccatgggttcctgggttcct 327

                                                                       
Query: 121 gaaaggaaagctggggttggatgggaaaggcggtgagaaaaataacgagccaagacaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gaaaggaaagctggggttggatgggaaaggcggtgagaaaaataacgagccaagacaaag 387

                                                                       
Query: 181 ttccctggtcaaggccaatatttacttatgagtctgagcttataa--ggcggcggcgggg 238
           ||||||||||||||||||| |||||||||||||||||||||||||  ||        |||
Sbjct: 388 ttccctggtcaaggccaatgtttacttatgagtctgagcttataaaagg--------ggg 439

                                                                       
Query: 239 ggggggtactctcatctccctctttgccaggatctcattgctatgtcaggatctagtcag 298
           |||||| || | |||| ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 440 ggggggaac-c-catcccccactttgccaggatctcattgctatgtcaggatctggtcag 497

                                                                       
Query: 299 gaaaacaggttcagcctttcagcaggcgttttggagggagcagcagatgtggcaggacaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gaaaacaggttcagcctttcagcaggcgttttggagggagcagcagatgtggcaggacaa 557

                                                                       
Query: 359 tagactttacctcggtcagaagactccaccctaggtgggctagcaactgtggcaaacaag 418
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tagactttacctcagtcagaagactccaccctaggtgggctagcaactgtggcaaacaag 617

                                                                       
Query: 419 gtctgagccagtttgctcaagtctggtggtgggtgg-tggggg-agggtacatcattgct 476
           |||||||||||| |||||||||||||||||||| || |||||| |||| ||| |||||||
Sbjct: 618 gtctgagccagtctgctcaagtctggtggtggg-ggctggggggagggcacaccattgct 676

                                                                       
Query: 477 ccctccagaacctccactcagatcccttctagatctggtgtctttccaaggtctctgctt 536
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ccctccagaacctccacccagatcccttctagatctggtgtctttccaaggtctctgctt 736

                                        
Query: 537 taaacaggctgatatttaattaccgccaa 565
           |||||||||||||||||||||||||||||
Sbjct: 737 taaacaggctgatatttaattaccgccaa 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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